Wall clock time and date at job start Mon Mar 30 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00256 * 2 1 4 4 C 1.46893 * 110.99959 * 123.95847 * 2 1 3 5 5 C 1.53783 * 113.61582 * 67.76859 * 4 2 1 6 6 C 1.53780 * 87.07968 * 139.98037 * 5 4 2 7 7 N 1.46908 * 113.61669 * 220.01980 * 6 5 4 8 8 C 1.46896 * 111.00291 * 205.00546 * 7 6 5 9 9 C 1.52993 * 109.47266 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47212 * 64.99532 * 9 8 7 11 11 C 1.42904 * 113.99803 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46739 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99455 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00379 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99503 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47252 * 60.00241 * 16 14 12 18 18 H 1.48507 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47620 * 300.00018 * 16 14 12 20 20 C 1.53776 * 87.08223 * 334.56644 * 6 5 4 21 21 H 1.09004 * 109.46704 * 296.04711 * 1 2 3 22 22 H 1.09003 * 109.47355 * 56.03895 * 1 2 3 23 23 H 1.09000 * 109.47325 * 176.04743 * 1 2 3 24 24 H 1.08994 * 109.47224 * 186.34348 * 3 2 1 25 25 H 1.09004 * 109.47250 * 306.34531 * 3 2 1 26 26 H 1.08997 * 109.47108 * 66.34147 * 3 2 1 27 27 H 1.08998 * 112.91074 * 296.51762 * 4 2 1 28 28 H 1.09001 * 113.61540 * 25.43265 * 5 4 2 29 29 H 1.09001 * 113.61932 * 254.52593 * 5 4 2 30 30 H 1.08998 * 113.61577 * 89.11754 * 6 5 4 31 31 H 1.00894 * 111.00195 * 81.04277 * 7 6 5 32 32 H 1.09001 * 109.46908 * 299.99826 * 8 7 6 33 33 H 1.09006 * 109.47380 * 59.99255 * 8 7 6 34 34 H 1.09003 * 109.46941 * 184.99613 * 9 8 7 35 35 H 1.09005 * 109.46968 * 304.99491 * 9 8 7 36 36 H 1.09004 * 109.46899 * 299.99508 * 11 10 9 37 37 H 1.08997 * 109.47099 * 59.99611 * 11 10 9 38 38 H 0.97003 * 119.99836 * 180.02562 * 15 14 12 39 39 H 1.09005 * 113.60957 * 139.98016 * 20 6 5 40 40 H 1.08996 * 113.61493 * 270.88313 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7185 -2.2759 1.0444 6 6 3.1387 -2.4904 1.5938 7 7 3.8563 -3.6006 0.9528 8 6 4.8914 -4.1424 1.8432 9 6 5.6148 -5.2942 1.1427 10 8 6.3193 -4.7927 0.0051 11 6 7.0325 -5.7933 -0.7244 12 6 7.7348 -5.1561 -1.8957 13 1 7.6451 -4.0934 -2.0662 14 6 8.4919 -5.9299 -2.7496 15 7 8.6007 -7.2240 -2.5423 16 14 9.3618 -5.1401 -4.2018 17 1 10.3141 -4.1126 -3.7094 18 1 10.1031 -6.1799 -4.9600 19 1 8.3593 -4.5002 -5.0912 20 6 3.4884 -1.1118 1.0092 21 1 -0.3633 0.4513 0.9233 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 3.0792 1.3445 -0.1135 25 1 1.5572 1.9289 -0.8278 26 1 1.7408 1.8583 0.9413 27 1 1.7290 -0.3319 2.1011 28 1 1.5868 -2.6335 0.0232 29 1 0.9333 -2.6182 1.7185 30 1 3.1849 -2.5277 2.6822 31 1 4.2524 -3.3135 0.0704 32 1 5.6077 -3.3578 2.0873 33 1 4.4275 -4.5085 2.7592 34 1 6.3212 -5.7536 1.8342 35 1 4.8863 -6.0381 0.8201 36 1 7.7684 -6.2633 -0.0719 37 1 6.3332 -6.5472 -1.0858 38 1 9.1337 -7.7682 -3.1429 39 1 4.1320 -0.5142 1.6550 40 1 3.8405 -1.1511 -0.0215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706150607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:10 Heat of formation + Delta-G solvation = -26.537832 kcal Electronic energy + Delta-G solvation = -17368.941577 eV Core-core repulsion = 14605.258074 eV Total energy + Delta-G solvation = -2763.683503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66161 -37.04009 -35.85353 -33.41808 -32.47751 -28.46525 -27.99471 -26.64684 -25.29940 -24.74770 -22.33757 -21.64894 -21.19760 -19.46219 -16.44004 -16.29856 -15.81573 -15.54793 -15.23926 -14.93168 -14.50770 -14.34819 -14.04955 -13.45925 -13.27784 -12.63089 -12.50168 -12.31370 -12.07555 -11.84475 -11.79616 -11.71239 -11.36637 -11.04372 -10.80781 -10.79806 -10.67601 -10.40826 -10.27144 -9.94207 -9.09051 -8.79135 -8.53407 -8.13992 -8.07963 -6.08199 -4.09974 3.34261 3.36831 3.40736 3.78435 4.36414 4.39417 4.55169 4.67684 4.87782 4.91504 5.00401 5.05242 5.16174 5.28201 5.32035 5.36922 5.42464 5.55836 5.68040 5.71504 5.73897 5.76820 5.85425 6.00573 6.06217 6.14485 6.22239 6.27895 6.41730 6.84594 6.97959 7.14475 7.34143 7.47170 7.72641 7.81521 8.18275 8.60991 9.02989 9.54779 11.03324 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.004153 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.709565 B = 6741.274605 C = 7520.848340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.025 3.975 4 C 0.051 3.949 5 C -0.114 4.114 6 C 0.068 3.932 7 N -0.674 5.674 8 C 0.066 3.934 9 C 0.061 3.939 10 O -0.399 6.399 11 C 0.198 3.802 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.154 4.154 21 H 0.021 0.979 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.359 0.641 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.003 0.997 37 H 0.006 0.994 38 H 0.264 0.736 39 H 0.061 0.939 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 12.827 9.023 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.124 4.124 4 C -0.058 4.058 5 C -0.153 4.153 6 C -0.043 4.043 7 N -0.306 5.306 8 C -0.064 4.064 9 C -0.017 4.017 10 O -0.319 6.319 11 C 0.123 3.877 12 C -0.554 4.554 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.194 4.194 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.180 0.820 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.350 12.130 8.628 20.676 hybrid contribution 0.884 1.137 0.064 1.442 sum -13.466 13.267 8.692 20.806 Atomic orbital electron populations 1.22345 0.87579 1.02407 1.00004 1.62186 1.07688 1.13640 1.42254 1.22344 1.01245 0.88841 0.99933 1.23050 0.96663 0.94499 0.91608 1.23116 0.96645 0.92825 1.02698 1.22817 0.95091 0.88477 0.97952 1.60411 1.29815 1.33216 1.07179 1.21981 0.92307 0.96739 0.95344 1.22307 0.94444 0.95373 0.89557 1.87788 1.66749 1.37348 1.40038 1.20166 0.90077 0.87054 0.90372 1.21023 1.29404 0.95433 1.09492 0.91660 1.24944 0.96515 0.94811 0.98195 1.69955 1.40615 1.04832 1.38406 0.86401 0.79550 0.78751 0.81793 1.20070 1.21169 1.19972 1.23759 0.94931 0.98134 1.02547 0.96042 0.91586 0.91117 0.91188 0.91567 0.96007 0.92156 0.88614 0.91899 0.89122 0.81975 0.94800 0.90835 0.94241 0.93569 0.97873 0.97616 0.92613 0.92021 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.45 60.07 0.57 0.79 16 2 N -0.53 -5.72 4.96 -242.20 -1.20 -6.92 16 3 C 0.02 0.23 9.46 60.06 0.57 0.80 16 4 C 0.05 0.54 3.17 -66.90 -0.21 0.32 16 5 C -0.11 -1.28 6.85 -25.92 -0.18 -1.46 16 6 C 0.07 0.83 4.18 -66.90 -0.28 0.55 16 7 N -0.67 -10.21 6.62 -105.87 -0.70 -10.92 16 8 C 0.07 1.00 5.95 -3.83 -0.02 0.98 16 9 C 0.06 1.16 6.28 37.15 0.23 1.39 16 10 O -0.40 -9.66 9.85 -35.23 -0.35 -10.00 16 11 C 0.20 5.50 5.69 36.01 0.20 5.71 16 12 C -0.52 -15.33 9.43 -34.44 -0.32 -15.65 16 13 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.15 -1.80 6.86 -25.92 -0.18 -1.98 16 21 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 22 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 23 H 0.07 0.62 7.57 -51.93 -0.39 0.23 16 24 H 0.07 0.67 7.74 -51.93 -0.40 0.27 16 25 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 31 H 0.36 6.14 7.75 -39.29 -0.30 5.83 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.28 7.82 -51.93 -0.41 0.88 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -30.86 327.10 -8.69 -39.55 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.37 Total: -0.19 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.28 Total: -7.01 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -1.17 Total: -44.30 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.86 -8.69 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706150607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.017 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds