Wall clock time and date at job start Mon Mar 30 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00256 * 2 1 4 4 C 1.46893 * 110.99959 * 123.95847 * 2 1 3 5 5 C 1.53783 * 113.61582 * 67.76859 * 4 2 1 6 6 C 1.53780 * 87.07968 * 139.98037 * 5 4 2 7 7 N 1.46908 * 113.61669 * 220.01980 * 6 5 4 8 8 C 1.46896 * 111.00291 * 205.00546 * 7 6 5 9 9 C 1.52993 * 109.47266 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47212 * 64.99532 * 9 8 7 11 11 C 1.42904 * 113.99803 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46739 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99455 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00379 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99503 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47252 * 60.00241 * 16 14 12 18 18 H 1.48507 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47620 * 300.00018 * 16 14 12 20 20 C 1.53776 * 87.08223 * 334.56644 * 6 5 4 21 21 H 1.09004 * 109.46704 * 296.04711 * 1 2 3 22 22 H 1.09003 * 109.47355 * 56.03895 * 1 2 3 23 23 H 1.09000 * 109.47325 * 176.04743 * 1 2 3 24 24 H 1.08994 * 109.47224 * 186.34348 * 3 2 1 25 25 H 1.09004 * 109.47250 * 306.34531 * 3 2 1 26 26 H 1.08997 * 109.47108 * 66.34147 * 3 2 1 27 27 H 1.08998 * 112.91074 * 296.51762 * 4 2 1 28 28 H 1.09001 * 113.61540 * 25.43265 * 5 4 2 29 29 H 1.09001 * 113.61932 * 254.52593 * 5 4 2 30 30 H 1.08998 * 113.61577 * 89.11754 * 6 5 4 31 31 H 1.00894 * 111.00195 * 81.04277 * 7 6 5 32 32 H 1.09001 * 109.46908 * 299.99826 * 8 7 6 33 33 H 1.09006 * 109.47380 * 59.99255 * 8 7 6 34 34 H 1.09003 * 109.46941 * 184.99613 * 9 8 7 35 35 H 1.09005 * 109.46968 * 304.99491 * 9 8 7 36 36 H 1.09004 * 109.46899 * 299.99508 * 11 10 9 37 37 H 1.08997 * 109.47099 * 59.99611 * 11 10 9 38 38 H 0.97003 * 119.99836 * 180.02562 * 15 14 12 39 39 H 1.09005 * 113.60957 * 139.98016 * 20 6 5 40 40 H 1.08996 * 113.61493 * 270.88313 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7185 -2.2759 1.0444 6 6 3.1387 -2.4904 1.5938 7 7 3.8563 -3.6006 0.9528 8 6 4.8914 -4.1424 1.8432 9 6 5.6148 -5.2942 1.1427 10 8 6.3193 -4.7927 0.0051 11 6 7.0325 -5.7933 -0.7244 12 6 7.7348 -5.1561 -1.8957 13 1 7.6451 -4.0934 -2.0662 14 6 8.4919 -5.9299 -2.7496 15 7 8.6007 -7.2240 -2.5423 16 14 9.3618 -5.1401 -4.2018 17 1 10.3141 -4.1126 -3.7094 18 1 10.1031 -6.1799 -4.9600 19 1 8.3593 -4.5002 -5.0912 20 6 3.4884 -1.1118 1.0092 21 1 -0.3633 0.4513 0.9233 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 3.0792 1.3445 -0.1135 25 1 1.5572 1.9289 -0.8278 26 1 1.7408 1.8583 0.9413 27 1 1.7290 -0.3319 2.1011 28 1 1.5868 -2.6335 0.0232 29 1 0.9333 -2.6182 1.7185 30 1 3.1849 -2.5277 2.6822 31 1 4.2524 -3.3135 0.0704 32 1 5.6077 -3.3578 2.0873 33 1 4.4275 -4.5085 2.7592 34 1 6.3212 -5.7536 1.8342 35 1 4.8863 -6.0381 0.8201 36 1 7.7684 -6.2633 -0.0719 37 1 6.3332 -6.5472 -1.0858 38 1 9.1337 -7.7682 -3.1429 39 1 4.1320 -0.5142 1.6550 40 1 3.8405 -1.1511 -0.0215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706150607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:10 Heat of formation + Delta-G solvation = -49.088792 kcal Electronic energy + Delta-G solvation = -17369.919460 eV Core-core repulsion = 14605.258074 eV Total energy + Delta-G solvation = -2764.661386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57878 -38.74034 -36.92661 -35.08587 -34.22041 -30.14589 -28.72467 -28.51710 -26.19026 -25.65140 -24.51817 -22.92759 -22.22159 -20.38786 -18.62537 -17.53929 -17.24841 -16.79209 -16.54318 -16.32751 -15.76641 -15.65752 -15.19919 -14.94732 -14.64500 -14.03817 -13.41869 -13.36106 -13.29778 -13.15532 -12.99501 -12.84936 -12.66585 -12.59403 -12.53636 -12.34305 -12.07426 -11.85449 -11.35786 -11.29985 -11.19378 -10.85784 -10.22566 -9.29705 -9.22999 -8.31699 -6.44373 1.40309 1.45263 1.53591 2.35157 2.97236 3.02144 3.21538 3.36699 3.62507 3.76484 3.98055 4.02298 4.24044 4.28823 4.41393 4.47306 4.48145 4.60660 4.67257 4.68802 4.79789 4.81643 4.86540 4.92861 4.97391 5.00600 5.02980 5.08562 5.18146 5.25531 5.30631 5.54811 5.96066 6.11899 6.17873 6.25428 6.42371 6.53751 6.81909 7.27610 8.80555 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.004153 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.709565 B = 6741.274605 C = 7520.848340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.026 3.974 4 C 0.061 3.939 5 C -0.109 4.109 6 C 0.066 3.934 7 N -0.686 5.686 8 C 0.076 3.924 9 C 0.052 3.948 10 O -0.409 6.409 11 C 0.212 3.788 12 C -0.550 4.550 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.266 1.266 20 C -0.153 4.153 21 H 0.031 0.969 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.344 0.656 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.042 0.958 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 14.157 9.350 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.123 4.123 4 C -0.048 4.048 5 C -0.148 4.148 6 C -0.044 4.044 7 N -0.316 5.316 8 C -0.053 4.053 9 C -0.025 4.025 10 O -0.329 6.329 11 C 0.137 3.863 12 C -0.587 4.587 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.193 4.193 21 H 0.049 0.951 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.163 0.837 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.831 13.468 8.987 21.957 hybrid contribution 0.963 0.697 0.027 1.190 sum -13.867 14.165 9.013 21.776 Atomic orbital electron populations 1.22360 0.86485 1.02532 1.00840 1.62161 1.08860 1.14472 1.42533 1.22345 1.00768 0.88342 1.00795 1.22966 0.95430 0.94102 0.92274 1.23026 0.96514 0.93479 1.01786 1.22975 0.95112 0.87554 0.98790 1.60463 1.29579 1.34782 1.06777 1.21956 0.92310 0.95318 0.95760 1.22639 0.94396 0.97232 0.88213 1.87754 1.66874 1.36657 1.41615 1.19784 0.89297 0.87082 0.90177 1.21371 1.30830 0.95615 1.10911 0.91949 1.25969 0.96787 0.95304 1.01144 1.70066 1.41001 1.06324 1.39650 0.85233 0.78421 0.78096 0.77649 1.18952 1.19953 1.19040 1.23663 0.96104 0.98210 1.01292 0.95075 0.90859 0.91371 0.92004 0.90734 0.95069 0.90738 0.90635 0.90395 0.87203 0.83701 0.94812 0.87607 0.93333 0.94001 0.99713 0.99834 0.92021 0.91300 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.45 127.69 1.21 1.62 16 2 N -0.56 -11.21 4.96 -920.17 -4.56 -15.77 16 3 C 0.03 0.44 9.46 127.69 1.21 1.65 16 4 C 0.06 1.19 3.17 45.44 0.14 1.34 16 5 C -0.11 -2.31 6.85 31.12 0.21 -2.10 16 6 C 0.07 1.51 4.18 45.44 0.19 1.70 16 7 N -0.69 -20.39 6.62 -488.86 -3.24 -23.63 16 8 C 0.08 2.22 5.95 86.30 0.51 2.74 16 9 C 0.05 1.99 6.28 71.98 0.45 2.44 16 10 O -0.41 -20.24 9.85 -148.98 -1.47 -21.71 16 11 C 0.21 12.18 5.69 71.24 0.41 12.59 16 12 C -0.55 -33.30 9.43 25.60 0.24 -33.06 16 13 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 16 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 C -0.15 -3.45 6.86 31.12 0.21 -3.24 16 21 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 23 H 0.07 1.12 7.57 -2.39 -0.02 1.10 16 24 H 0.06 1.14 7.74 -2.39 -0.02 1.12 16 25 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 26 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.34 11.99 7.75 -89.70 -0.70 11.29 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 2.46 8.13 -2.38 -0.02 2.44 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 36 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 Total: -1.00 -66.29 327.10 -1.42 -67.71 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.29 Total: 16.52 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.25 Total: -13.48 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -7.51 Total: -95.96 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.47 Total: -21.71 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.29 -1.42 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706150607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.620 kcal (2) G-P(sol) polarization free energy of solvation -66.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds