Wall clock time and date at job start Mon Mar 30 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99962 * 2 1 4 4 C 1.53003 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46677 * 304.99475 * 4 3 2 6 6 O 1.42898 * 109.47280 * 64.99803 * 4 3 2 7 7 C 1.53001 * 109.47144 * 184.99963 * 4 3 2 8 8 N 1.46895 * 109.47075 * 179.97438 * 7 4 3 9 9 C 1.46894 * 111.00239 * 293.95087 * 8 7 4 10 10 C 1.46908 * 110.99988 * 169.99714 * 8 7 4 11 11 C 1.53001 * 109.47246 * 196.04270 * 10 8 7 12 12 C 1.50700 * 115.54884 * 55.25515 * 11 10 8 13 13 H 1.07998 * 120.00377 * 265.06745 * 12 11 10 14 14 C 1.37877 * 119.99641 * 85.07826 * 12 11 10 15 15 N 1.31509 * 120.00382 * 4.39852 * 14 12 11 16 16 Si 1.86808 * 119.99870 * 184.40151 * 14 12 11 17 17 H 1.48490 * 109.46921 * 89.99669 * 16 14 12 18 18 H 1.48494 * 109.47065 * 209.99819 * 16 14 12 19 19 H 1.48497 * 109.46797 * 329.99770 * 16 14 12 20 20 C 1.52996 * 117.49688 * 269.59016 * 11 10 8 21 21 C 1.52993 * 117.49819 * 200.92945 * 11 10 8 22 22 H 1.08999 * 109.47259 * 60.00044 * 1 2 3 23 23 H 1.08999 * 109.47370 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47204 * 300.00456 * 1 2 3 25 25 H 1.00902 * 110.99853 * 236.04285 * 2 1 3 26 26 H 1.09004 * 109.47033 * 299.99456 * 3 2 1 27 27 H 1.08996 * 109.47331 * 59.99489 * 3 2 1 28 28 H 0.96703 * 114.00157 * 59.99604 * 6 4 3 29 29 H 1.09005 * 109.46571 * 299.99767 * 7 4 3 30 30 H 1.08996 * 109.47578 * 59.99589 * 7 4 3 31 31 H 1.09000 * 109.46695 * 58.96022 * 9 8 7 32 32 H 1.08998 * 109.47401 * 178.95627 * 9 8 7 33 33 H 1.09000 * 109.47152 * 298.95774 * 9 8 7 34 34 H 1.09001 * 109.46794 * 316.04141 * 10 8 7 35 35 H 1.08996 * 109.46919 * 76.04169 * 10 8 7 36 36 H 0.96997 * 120.00306 * 185.01665 * 15 14 12 37 37 H 1.09000 * 117.50316 * 359.97438 * 20 11 10 38 38 H 1.08998 * 117.49968 * 145.01999 * 20 11 10 39 39 H 1.09002 * 117.50123 * 214.97542 * 21 11 10 40 40 H 1.08999 * 117.49932 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8719 0.7319 0.8427 6 8 3.9864 0.7484 -1.2201 7 6 4.0730 2.7535 0.1264 8 7 5.5414 2.7142 0.1276 9 6 6.0490 2.0369 1.3282 10 6 6.1044 4.0659 0.0080 11 6 7.5797 3.9709 -0.3860 12 6 7.8689 3.1813 -1.6366 13 1 8.1373 2.1376 -1.5663 14 6 7.7910 3.7915 -2.8706 15 7 7.5496 5.0817 -2.9521 16 14 8.0284 2.7855 -4.4266 17 1 6.7163 2.2591 -4.8806 18 1 8.6108 3.6455 -5.4879 19 1 8.9469 1.6524 -4.1481 20 6 8.6099 3.9077 0.7434 21 6 8.4683 5.1815 -0.0936 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8306 -0.5262 -0.7814 26 1 1.6460 1.8947 -0.8901 27 1 1.6459 1.8948 0.8899 28 1 3.7141 1.2301 -2.0132 29 1 3.7259 3.3522 -0.7158 30 1 3.7210 3.1976 1.0574 31 1 5.6571 1.0205 1.3649 32 1 7.1380 2.0054 1.2947 33 1 5.7284 2.5823 2.2159 34 1 5.5592 4.6202 -0.7560 35 1 6.0161 4.5820 0.9639 36 1 7.4225 5.4975 -3.8192 37 1 8.2366 3.9342 1.7671 38 1 9.4970 3.2954 0.5817 39 1 9.2624 5.4067 -0.8055 40 1 8.0018 6.0458 0.3792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708840334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:10 Heat of formation + Delta-G solvation = -16.852010 kcal Electronic energy + Delta-G solvation = -18355.309526 eV Core-core repulsion = 15592.046031 eV Total energy + Delta-G solvation = -2763.263495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.48207 -37.03560 -35.20732 -34.38152 -31.73531 -29.99441 -26.94045 -26.62433 -25.21029 -23.76709 -21.90488 -20.98253 -20.57184 -18.88402 -16.66433 -16.12857 -15.79576 -15.18009 -14.64948 -14.53299 -14.39417 -14.03603 -13.72750 -13.60825 -12.89124 -12.59909 -12.41947 -12.07121 -11.79909 -11.54081 -11.20951 -11.13943 -11.02824 -10.80127 -10.61996 -10.44913 -10.31636 -10.04213 -9.74011 -9.20095 -8.81277 -8.57443 -8.22546 -7.94588 -7.34668 -5.86076 -3.86835 3.41378 3.47014 3.52386 4.01055 4.55047 4.60161 4.83774 5.08853 5.13101 5.27251 5.33214 5.40945 5.44064 5.52627 5.63281 5.66889 5.68882 5.90663 6.02648 6.06383 6.25432 6.32930 6.37805 6.54056 6.62979 6.66742 6.81119 6.83635 6.99870 7.20592 7.26962 7.54902 7.62262 7.87485 8.05090 8.06531 8.09752 8.65008 9.11977 9.75513 11.23401 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.006805 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.376058 B = 4113.682705 C = 4916.618000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.026 3.974 4 C 0.114 3.886 5 H 0.103 0.897 6 O -0.542 6.542 7 C 0.025 3.975 8 N -0.503 5.503 9 C 0.029 3.971 10 C 0.104 3.896 11 C 0.053 3.947 12 C -0.454 4.454 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.276 1.276 20 C -0.218 4.218 21 C -0.154 4.154 22 H 0.019 0.981 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.349 0.651 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.370 0.630 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.006 0.994 34 H 0.070 0.930 35 H -0.001 1.001 36 H 0.255 0.745 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.056 -4.981 5.749 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C -0.104 4.104 4 C 0.054 3.946 5 H 0.120 0.880 6 O -0.346 6.346 7 C -0.104 4.104 8 N -0.226 5.226 9 C -0.120 4.120 10 C -0.023 4.023 11 C 0.052 3.948 12 C -0.492 4.492 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.219 1.219 19 H -0.201 1.201 20 C -0.255 4.255 21 C -0.192 4.192 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.168 0.832 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.216 0.784 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.088 0.912 35 H 0.018 0.982 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.549 -5.596 6.294 13.499 hybrid contribution -0.779 0.875 -1.405 1.829 sum -11.328 -4.721 4.889 13.210 Atomic orbital electron populations 1.22193 0.88207 1.01682 1.00171 1.60325 1.07209 1.14028 1.50776 1.22731 0.96820 0.89920 1.00977 1.21931 0.89758 0.94064 0.88837 0.87964 1.86614 1.78780 1.54251 1.14979 1.22762 0.90875 0.96562 1.00249 1.61659 1.03265 1.19869 1.37763 1.22416 1.02154 0.97880 0.89535 1.21703 0.97633 0.86568 0.96410 1.18801 0.86256 0.96776 0.92939 1.20266 1.44825 0.95419 0.88683 0.92370 1.24896 0.95492 0.94493 0.98576 1.70018 1.49922 1.09160 1.23977 0.86665 0.78245 0.80072 0.83394 1.20827 1.21867 1.20079 1.23053 1.03981 1.03561 0.94899 1.22505 1.04705 0.90480 1.01496 0.96230 0.91529 0.91941 0.83216 0.94961 0.90547 0.78398 0.90978 0.95473 0.92470 0.90428 0.97578 0.91184 0.98250 0.93525 0.92255 0.90640 0.89737 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.06 0.64 0.90 16 2 N -0.69 -7.96 6.86 -121.13 -0.83 -8.79 16 3 C 0.03 0.30 5.36 -3.82 -0.02 0.28 16 4 C 0.11 1.64 3.08 -26.73 -0.08 1.55 16 5 H 0.10 1.56 6.53 -51.93 -0.34 1.22 16 6 O -0.54 -8.76 12.72 -35.23 -0.45 -9.21 16 7 C 0.03 0.40 4.61 -3.83 -0.02 0.39 16 8 N -0.50 -9.98 4.28 -242.92 -1.04 -11.02 16 9 C 0.03 0.51 9.07 60.06 0.55 1.06 16 10 C 0.10 2.32 4.88 -3.82 -0.02 2.30 16 11 C 0.05 1.30 1.24 -155.67 -0.19 1.11 16 12 C -0.45 -12.42 8.53 -34.44 -0.29 -12.72 16 13 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 14 C 0.07 1.82 5.43 -17.82 -0.10 1.72 16 15 N -0.89 -25.36 12.65 55.43 0.70 -24.66 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.22 -4.82 8.35 -26.70 -0.22 -5.04 16 21 C -0.15 -3.68 9.18 -26.70 -0.24 -3.93 16 22 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.35 4.02 8.38 -39.29 -0.33 3.69 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.37 5.18 9.05 45.56 0.41 5.59 16 29 H 0.07 1.18 7.86 -51.93 -0.41 0.77 16 30 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.06 0.95 6.42 -51.93 -0.33 0.62 16 32 H 0.08 1.51 6.07 -51.93 -0.32 1.19 16 33 H 0.01 0.10 8.14 -51.93 -0.42 -0.33 16 34 H 0.07 1.68 7.81 -51.93 -0.41 1.28 16 35 H 0.00 -0.01 8.00 -51.93 -0.42 -0.43 16 36 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.08 2.18 8.14 -51.93 -0.42 1.76 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -29.41 323.49 -8.09 -37.50 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.32 Total: 6.99 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 0.00 Total: -12.37 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.17 Total: -44.48 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.45 Total: -9.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.41 -8.09 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708840334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.650 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds