Wall clock time and date at job start Mon Mar 30 2020 04:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99962 * 2 1 4 4 C 1.53003 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46677 * 304.99475 * 4 3 2 6 6 O 1.42898 * 109.47280 * 64.99803 * 4 3 2 7 7 C 1.53001 * 109.47144 * 184.99963 * 4 3 2 8 8 N 1.46895 * 109.47075 * 179.97438 * 7 4 3 9 9 C 1.46894 * 111.00239 * 293.95087 * 8 7 4 10 10 C 1.46908 * 110.99988 * 169.99714 * 8 7 4 11 11 C 1.53001 * 109.47246 * 196.04270 * 10 8 7 12 12 C 1.50700 * 115.54884 * 55.25515 * 11 10 8 13 13 H 1.07998 * 120.00377 * 265.06745 * 12 11 10 14 14 C 1.37877 * 119.99641 * 85.07826 * 12 11 10 15 15 N 1.31509 * 120.00382 * 4.39852 * 14 12 11 16 16 Si 1.86808 * 119.99870 * 184.40151 * 14 12 11 17 17 H 1.48490 * 109.46921 * 89.99669 * 16 14 12 18 18 H 1.48494 * 109.47065 * 209.99819 * 16 14 12 19 19 H 1.48497 * 109.46797 * 329.99770 * 16 14 12 20 20 C 1.52996 * 117.49688 * 269.59016 * 11 10 8 21 21 C 1.52993 * 117.49819 * 200.92945 * 11 10 8 22 22 H 1.08999 * 109.47259 * 60.00044 * 1 2 3 23 23 H 1.08999 * 109.47370 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47204 * 300.00456 * 1 2 3 25 25 H 1.00902 * 110.99853 * 236.04285 * 2 1 3 26 26 H 1.09004 * 109.47033 * 299.99456 * 3 2 1 27 27 H 1.08996 * 109.47331 * 59.99489 * 3 2 1 28 28 H 0.96703 * 114.00157 * 59.99604 * 6 4 3 29 29 H 1.09005 * 109.46571 * 299.99767 * 7 4 3 30 30 H 1.08996 * 109.47578 * 59.99589 * 7 4 3 31 31 H 1.09000 * 109.46695 * 58.96022 * 9 8 7 32 32 H 1.08998 * 109.47401 * 178.95627 * 9 8 7 33 33 H 1.09000 * 109.47152 * 298.95774 * 9 8 7 34 34 H 1.09001 * 109.46794 * 316.04141 * 10 8 7 35 35 H 1.08996 * 109.46919 * 76.04169 * 10 8 7 36 36 H 0.96997 * 120.00306 * 185.01665 * 15 14 12 37 37 H 1.09000 * 117.50316 * 359.97438 * 20 11 10 38 38 H 1.08998 * 117.49968 * 145.01999 * 20 11 10 39 39 H 1.09002 * 117.50123 * 214.97542 * 21 11 10 40 40 H 1.08999 * 117.49932 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8719 0.7319 0.8427 6 8 3.9864 0.7484 -1.2201 7 6 4.0730 2.7535 0.1264 8 7 5.5414 2.7142 0.1276 9 6 6.0490 2.0369 1.3282 10 6 6.1044 4.0659 0.0080 11 6 7.5797 3.9709 -0.3860 12 6 7.8689 3.1813 -1.6366 13 1 8.1373 2.1376 -1.5663 14 6 7.7910 3.7915 -2.8706 15 7 7.5496 5.0817 -2.9521 16 14 8.0284 2.7855 -4.4266 17 1 6.7163 2.2591 -4.8806 18 1 8.6108 3.6455 -5.4879 19 1 8.9469 1.6524 -4.1481 20 6 8.6099 3.9077 0.7434 21 6 8.4683 5.1815 -0.0936 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8306 -0.5262 -0.7814 26 1 1.6460 1.8947 -0.8901 27 1 1.6459 1.8948 0.8899 28 1 3.7141 1.2301 -2.0132 29 1 3.7259 3.3522 -0.7158 30 1 3.7210 3.1976 1.0574 31 1 5.6571 1.0205 1.3649 32 1 7.1380 2.0054 1.2947 33 1 5.7284 2.5823 2.2159 34 1 5.5592 4.6202 -0.7560 35 1 6.0161 4.5820 0.9639 36 1 7.4225 5.4975 -3.8192 37 1 8.2366 3.9342 1.7671 38 1 9.4970 3.2954 0.5817 39 1 9.2624 5.4067 -0.8055 40 1 8.0018 6.0458 0.3792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708840334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:09 Heat of formation + Delta-G solvation = -39.487793 kcal Electronic energy + Delta-G solvation = -18356.291087 eV Core-core repulsion = 15592.046031 eV Total energy + Delta-G solvation = -2764.245056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82301 -38.57271 -36.46723 -35.68136 -33.83084 -31.15862 -28.56405 -27.78125 -27.17872 -24.88193 -23.07696 -22.83270 -21.88689 -20.81115 -17.91406 -17.71379 -17.14326 -16.55300 -16.34593 -15.97472 -15.85640 -15.33405 -15.18270 -14.80806 -14.34515 -14.12125 -13.67336 -13.41501 -13.07382 -12.92135 -12.75641 -12.62584 -12.57922 -12.47826 -12.39554 -12.28213 -11.95050 -11.65417 -11.28025 -10.82707 -10.73428 -10.22796 -9.85003 -9.42505 -8.83769 -7.97426 -6.02582 1.45496 1.46967 1.55934 2.52790 2.91218 3.31668 3.40873 3.62082 3.72134 4.01086 4.12959 4.26173 4.34133 4.44814 4.48502 4.54944 4.59193 4.65111 4.68028 4.71197 4.77860 4.81899 4.86658 5.00827 5.01415 5.09281 5.19002 5.27344 5.33166 5.69794 5.74523 5.91753 5.99621 6.37683 6.40169 6.48916 6.63781 6.94618 6.99159 7.61708 9.11199 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.006805 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.376058 B = 4113.682705 C = 4916.618000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.036 3.964 4 C 0.123 3.877 5 H 0.096 0.904 6 O -0.562 6.562 7 C 0.027 3.973 8 N -0.525 5.525 9 C 0.033 3.967 10 C 0.118 3.882 11 C 0.029 3.971 12 C -0.462 4.462 13 H 0.041 0.959 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.941 3.059 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.191 4.191 21 C -0.161 4.161 22 H 0.024 0.976 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.347 0.653 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.377 0.623 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 -5.684 6.559 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.094 4.094 4 C 0.063 3.937 5 H 0.113 0.887 6 O -0.367 6.367 7 C -0.101 4.101 8 N -0.249 5.249 9 C -0.115 4.115 10 C -0.009 4.009 11 C 0.028 3.972 12 C -0.500 4.500 13 H 0.059 0.941 14 C -0.173 4.173 15 N -0.556 5.556 16 Si 0.768 3.232 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.228 4.228 21 C -0.199 4.199 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.166 0.834 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.224 0.776 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.748 -6.309 7.111 15.112 hybrid contribution -0.402 1.063 -1.626 1.984 sum -12.150 -5.246 5.485 14.326 Atomic orbital electron populations 1.22247 0.86746 1.02612 1.00608 1.60341 1.08622 1.13655 1.50840 1.22576 0.94736 0.90454 1.01676 1.21857 0.91412 0.92458 0.87948 0.88665 1.86577 1.79367 1.54915 1.15884 1.22797 0.88671 0.97881 1.00801 1.61560 1.05523 1.18542 1.39225 1.22362 1.01060 0.98600 0.89497 1.21383 0.95712 0.87876 0.95977 1.18928 0.88136 0.96916 0.93178 1.20404 1.44493 0.94830 0.90268 0.94090 1.25461 0.95605 0.95317 1.00947 1.70108 1.50959 1.10156 1.24363 0.85827 0.78183 0.78715 0.80444 1.20255 1.21716 1.20204 1.23005 1.02772 1.01514 0.95533 1.22402 1.04192 0.91450 1.01878 0.95767 0.90440 0.91449 0.83429 0.94442 0.89609 0.77585 0.91614 0.93776 0.91326 0.92159 0.95783 0.93803 0.97013 0.93655 0.89557 0.91053 0.92416 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 127.69 1.37 1.81 16 2 N -0.70 -14.76 6.86 -537.15 -3.68 -18.44 16 3 C 0.04 0.77 5.36 86.30 0.46 1.23 16 4 C 0.12 3.33 3.08 30.60 0.09 3.42 16 5 H 0.10 2.72 6.53 -2.39 -0.02 2.71 16 6 O -0.56 -17.61 12.72 -148.98 -1.90 -19.50 16 7 C 0.03 0.84 4.61 86.30 0.40 1.24 16 8 N -0.53 -20.25 4.28 -922.46 -3.95 -24.20 16 9 C 0.03 1.12 9.07 127.69 1.16 2.28 16 10 C 0.12 5.18 4.88 86.30 0.42 5.60 16 11 C 0.03 1.42 1.24 -52.93 -0.07 1.36 16 12 C -0.46 -25.45 8.53 25.60 0.22 -25.23 16 13 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 14 C 0.02 1.37 5.43 84.66 0.46 1.83 16 15 N -0.92 -52.63 12.65 21.45 0.27 -52.35 16 16 Si 0.94 44.85 29.54 68.60 2.03 46.88 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 C -0.19 -8.22 8.35 30.62 0.26 -7.97 16 21 C -0.16 -7.68 9.18 30.62 0.28 -7.40 16 22 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.35 7.45 8.38 -89.69 -0.75 6.70 16 26 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.38 10.30 9.05 -74.05 -0.67 9.63 16 29 H 0.07 2.08 7.86 -2.38 -0.02 2.07 16 30 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.07 2.16 6.42 -2.39 -0.02 2.14 16 32 H 0.06 2.25 6.07 -2.39 -0.01 2.23 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.04 2.11 7.81 -2.39 -0.02 2.10 16 35 H 0.01 0.48 8.00 -2.39 -0.02 0.46 16 36 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 37 H 0.09 3.24 8.03 -2.39 -0.02 3.22 16 38 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -61.64 323.49 -2.59 -64.23 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.41 Total: 25.23 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 5.05 Total: -21.84 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -7.36 Total: -94.99 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.90 Total: -19.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.64 -2.59 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708840334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.740 kcal (2) G-P(sol) polarization free energy of solvation -61.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds