Wall clock time and date at job start Mon Mar 30 2020 04:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86796 * 120.00343 * 2 1 4 4 H 1.48507 * 109.46810 * 269.99678 * 3 2 1 5 5 H 1.48501 * 109.47112 * 29.99417 * 3 2 1 6 6 H 1.48497 * 109.47039 * 149.99861 * 3 2 1 7 7 C 1.38665 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99909 * 0.02562 * 7 2 1 9 9 O 1.34857 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.35573 * 116.99878 * 180.02562 * 9 7 2 11 11 C 1.38975 * 119.68604 * 180.02562 * 10 9 7 12 12 C 1.38485 * 119.09474 * 179.72341 * 11 10 9 13 13 Br 1.89096 * 120.76740 * 179.97438 * 12 11 10 14 14 C 1.38948 * 118.46855 * 359.97438 * 12 11 10 15 15 C 1.38077 * 119.28726 * 0.02562 * 14 12 11 16 16 N 1.31930 * 120.85667 * 359.97438 * 15 14 12 17 17 H 0.97008 * 119.99450 * 0.02562 * 1 2 3 18 18 H 1.08004 * 120.45009 * 359.73663 * 11 10 9 19 19 H 1.08000 * 120.35730 * 179.97438 * 14 12 11 20 20 H 1.07999 * 119.57621 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 2.4971 2.0462 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5470 1.4400 0.7001 7 6 2.0087 -1.2009 0.0005 8 1 1.4686 -2.1362 0.0005 9 8 3.3573 -1.2010 0.0011 10 6 3.9726 -2.4090 0.0010 11 6 5.3608 -2.4743 0.0021 12 6 5.9767 -3.7147 0.0079 13 35 7.8621 -3.8586 0.0088 14 6 5.1771 -4.8511 0.0130 15 6 3.8035 -4.7106 0.0116 16 7 3.2457 -3.5150 0.0060 17 1 -0.4850 0.8402 -0.0004 18 1 5.9513 -1.5700 -0.0013 19 1 5.6252 -5.8337 0.0172 20 1 3.1777 -5.5907 0.0151 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709881347.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:15 Heat of formation + Delta-G solvation = -9.110951 kcal Electronic energy + Delta-G solvation = -10052.518847 eV Core-core repulsion = 7874.821469 eV Total energy + Delta-G solvation = -2177.697378 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.43300 -38.91478 -34.51093 -34.21720 -31.55554 -30.92477 -27.36871 -24.47728 -23.53013 -20.13433 -19.19231 -17.42424 -16.98513 -16.33911 -16.22867 -15.49011 -14.62244 -14.33354 -14.05454 -14.01879 -13.07863 -12.80569 -12.34812 -12.29986 -11.87484 -11.40986 -10.95440 -10.37430 -10.36043 -9.57574 -8.49853 -6.24425 0.07454 0.24580 0.36070 1.31431 1.35884 1.50849 2.26660 2.66269 2.75509 3.05332 3.57873 4.02707 4.18108 4.20770 4.70974 4.80831 4.98529 5.37818 5.84834 5.94660 6.74810 7.13260 7.43482 8.61857 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.050396 B = 0.007023 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.464650 B = 3985.971659 C = 4531.591377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.086 0.914 9 O -0.225 6.225 10 C 0.307 3.693 11 C -0.202 4.202 12 C -0.012 4.012 13 Br -0.013 7.013 14 C -0.208 4.208 15 C 0.147 3.853 16 N -0.564 5.564 17 H 0.286 0.714 18 H 0.148 0.852 19 H 0.175 0.825 20 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.590 -8.490 0.038 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.104 0.896 9 O -0.124 6.124 10 C 0.128 3.872 11 C -0.226 4.226 12 C -0.099 4.099 13 Br 0.073 6.927 14 C -0.230 4.230 15 C -0.011 4.011 16 N -0.291 5.291 17 H 0.095 0.905 18 H 0.166 0.834 19 H 0.193 0.807 20 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 16.317 -7.994 0.042 18.170 hybrid contribution 0.074 0.572 -0.018 0.577 sum 16.390 -7.422 0.024 17.993 Atomic orbital electron populations 1.69733 1.06988 1.29649 1.49508 1.25336 0.95946 1.02109 0.95552 0.85254 0.78911 0.77320 0.79463 1.18884 1.18994 1.18359 1.20650 0.77290 0.96585 1.51915 0.89613 1.83686 1.22579 1.24705 1.81444 1.20135 0.89404 0.85238 0.92452 1.20862 0.91325 0.99088 1.11305 1.21926 0.92142 0.94791 1.01014 1.96688 1.00119 1.98527 1.97406 1.22099 0.93928 0.99215 1.07775 1.23117 0.93236 0.93899 0.90883 1.67435 1.42228 0.99723 1.19734 0.90454 0.83435 0.80736 0.79210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.96 21.62 0.30 -55.10 14 2 C 0.01 0.55 5.49 84.84 0.47 1.02 14 3 Si 0.97 44.85 28.62 68.60 1.96 46.82 14 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 14 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 14 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 14 7 C -0.39 -23.32 10.10 67.92 0.69 -22.63 14 8 H 0.09 5.60 6.94 -2.91 -0.02 5.58 14 9 O -0.22 -12.24 8.57 -21.06 -0.18 -12.42 14 10 C 0.31 14.43 7.44 84.79 0.63 15.06 14 11 C -0.20 -7.59 9.83 22.51 0.22 -7.37 14 12 C -0.01 -0.35 6.27 22.50 0.14 -0.21 14 13 Br -0.01 -0.30 33.77 -20.37 -0.69 -0.99 14 14 C -0.21 -5.69 9.89 22.40 0.22 -5.47 14 15 C 0.15 4.80 11.17 84.64 0.95 5.74 14 16 N -0.56 -25.53 8.65 -308.92 -2.67 -28.20 14 17 H 0.29 15.70 8.31 -92.70 -0.77 14.93 14 18 H 0.15 5.11 8.06 -2.91 -0.02 5.09 14 19 H 0.18 3.33 8.06 -2.91 -0.02 3.31 14 20 H 0.19 4.63 8.06 -2.91 -0.02 4.61 14 Total: -1.00 -66.44 214.50 3.30 -63.15 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.26 Total: 0.61 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.31 Total: -13.86 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.37 Total: -83.30 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.18 Total: -12.42 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.96 Total: 46.82 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.69 Total: -0.99 kcal Total: -66.44 3.30 -63.15 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709881347.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.036 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds