Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38604 * 120.07835 * 2 1 4 4 C 1.38885 * 117.97134 * 179.97438 * 3 2 1 5 5 C 1.38619 * 117.96585 * 0.02562 * 4 3 2 6 6 S 1.76200 * 120.07578 * 179.97438 * 5 4 3 7 7 O 1.42093 * 106.39918 * 263.53564 * 6 5 4 8 8 O 1.42103 * 106.40284 * 36.45474 * 6 5 4 9 9 N 1.65591 * 107.21663 * 149.99562 * 6 5 4 10 10 C 1.36936 * 120.00072 * 64.99846 * 9 6 5 11 11 H 1.07999 * 120.00186 * 0.02562 * 10 9 6 12 12 C 1.38815 * 120.00029 * 179.97438 * 10 9 6 13 13 N 1.31617 * 120.00164 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99961 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47266 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47213 * 120.00398 * 14 12 10 17 17 H 1.48504 * 109.47481 * 240.00532 * 14 12 10 18 18 N 1.31929 * 119.84383 * 359.97438 * 5 4 3 19 19 N 1.28344 * 122.18738 * 0.02562 * 18 5 4 20 20 H 1.09000 * 109.47104 * 90.00110 * 1 2 3 21 21 H 1.09001 * 109.47210 * 210.00250 * 1 2 3 22 22 H 1.09010 * 109.46818 * 329.99984 * 1 2 3 23 23 H 1.07997 * 121.01707 * 0.02562 * 3 2 1 24 24 H 1.07994 * 121.01675 * 179.72435 * 4 3 2 25 25 H 0.97006 * 120.00264 * 244.99807 * 9 6 5 26 26 H 0.97000 * 120.00523 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0991 0.0005 6 16 5.9514 -0.2286 0.0005 7 8 6.3402 -0.4111 -1.3540 8 8 6.4322 0.8353 0.8105 9 7 6.3395 -1.6307 0.7914 10 6 5.9735 -2.8394 0.2619 11 1 5.4322 -2.8782 -0.6718 12 6 6.2993 -4.0148 0.9247 13 7 6.9595 -3.9675 2.0623 14 14 5.7995 -5.6635 0.2027 15 1 5.0719 -5.4450 -1.0733 16 1 7.0131 -6.4800 -0.0537 17 1 4.9166 -6.3763 1.1606 18 7 3.4508 -1.1890 0.0005 19 7 2.1682 -1.1417 0.0000 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.6797 2.1448 0.0004 24 1 4.1797 2.0528 -0.0039 25 1 6.8261 -1.5959 1.6299 26 1 7.1869 -4.7888 2.5257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712810759.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -18.851982 kcal Electronic energy + Delta-G solvation = -15381.657134 eV Core-core repulsion = 12588.134590 eV Total energy + Delta-G solvation = -2793.522544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58033 -35.95346 -34.78785 -34.66066 -33.71144 -32.81461 -31.10149 -28.18223 -24.67467 -24.47769 -22.90724 -18.78160 -18.25947 -17.66201 -16.92620 -16.03695 -15.46962 -15.07210 -14.64379 -14.31588 -13.97659 -13.54792 -13.11079 -12.88035 -12.40274 -12.01947 -11.63195 -11.34331 -11.11380 -11.00911 -10.84317 -10.50098 -10.30412 -10.08601 -10.02091 -9.83075 -9.58979 -9.41340 -8.39533 -6.65609 -3.89112 0.90211 1.07085 1.47872 3.20069 3.23892 3.31363 3.68010 3.93164 4.19816 4.45729 4.55086 4.66480 4.85830 5.02340 5.12665 5.21112 5.40050 5.44572 5.69911 5.82945 5.90247 6.18647 6.35212 7.04896 7.32617 8.54922 8.63537 8.97500 9.10498 10.47782 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.009823 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.283379 B = 2849.897721 C = 3716.954336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.079 3.921 3 C -0.142 4.142 4 C -0.055 4.055 5 C -0.481 4.481 6 S 2.551 3.449 7 O -0.963 6.963 8 O -1.007 7.007 9 N -0.912 5.912 10 C -0.212 4.212 11 H 0.118 0.882 12 C 0.026 3.974 13 N -0.852 5.852 14 Si 0.932 3.068 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.277 1.277 18 N -0.135 5.135 19 N -0.262 5.262 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.148 0.852 24 H 0.153 0.847 25 H 0.409 0.591 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 5.658 -1.661 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.064 4.064 3 C -0.172 4.172 4 C -0.084 4.084 5 C -0.697 4.697 6 S 2.639 3.361 7 O -0.952 6.952 8 O -0.995 6.995 9 N -0.660 5.660 10 C -0.361 4.361 11 H 0.136 0.864 12 C -0.185 4.185 13 N -0.495 5.495 14 Si 0.757 3.243 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.203 1.203 18 N 0.021 4.979 19 N -0.106 5.106 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.166 0.834 24 H 0.170 0.830 25 H 0.244 0.756 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.880 4.851 -2.129 10.340 hybrid contribution -0.840 0.831 0.443 1.262 sum -9.720 5.681 -1.686 11.384 Atomic orbital electron populations 1.20696 0.87845 1.03869 1.03432 1.22987 0.98860 0.91008 0.93568 1.22212 0.95032 0.99671 1.00241 1.22100 0.95469 0.98625 0.92227 1.37285 1.32885 0.95048 1.04526 1.11452 0.75211 0.73941 0.75507 1.93462 1.80451 1.86090 1.35169 1.93373 1.80076 1.57132 1.68888 1.52488 1.55882 1.18868 1.38787 1.19894 1.31042 0.81999 1.03200 0.86441 1.25513 0.96856 1.00611 0.95529 1.69714 1.34643 1.30299 1.14842 0.85751 0.78572 0.80340 0.79598 1.18411 1.20366 1.20269 1.73319 0.98211 1.24725 1.01603 1.73063 1.03178 1.24604 1.09795 0.89924 0.89876 0.90494 0.83410 0.82950 0.75564 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.20 36.01 0.37 -0.68 15 2 C 0.08 1.24 6.87 -82.41 -0.57 0.67 15 3 C -0.14 -2.06 9.88 -39.21 -0.39 -2.45 15 4 C -0.05 -0.96 9.70 -39.20 -0.38 -1.34 15 5 C -0.48 -10.29 6.85 -17.37 -0.12 -10.41 15 6 S 2.55 59.01 5.72 -107.50 -0.61 58.39 15 7 O -0.96 -24.50 17.72 -57.17 -1.01 -25.52 15 8 O -1.01 -24.01 17.72 -57.17 -1.01 -25.03 15 9 N -0.91 -22.29 5.74 31.50 0.18 -22.11 15 10 C -0.21 -5.37 8.73 -15.06 -0.13 -5.51 15 11 H 0.12 2.95 7.68 -52.49 -0.40 2.55 15 12 C 0.03 0.64 5.50 -17.43 -0.10 0.55 15 13 N -0.85 -21.78 13.06 55.49 0.72 -21.05 15 14 Si 0.93 19.55 29.55 -169.99 -5.02 14.52 15 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 18 N -0.13 -3.04 10.31 31.20 0.32 -2.72 15 19 N -0.26 -5.26 11.43 33.59 0.38 -4.88 15 20 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.08 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.08 0.59 8.09 -51.92 -0.42 0.17 15 23 H 0.15 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.15 2.26 8.00 -52.49 -0.42 1.84 15 25 H 0.41 9.93 8.02 -34.47 -0.28 9.65 15 26 H 0.28 6.63 8.31 -40.82 -0.34 6.29 15 LS Contribution 254.73 15.07 3.84 3.84 Total: -1.00 -31.66 254.73 -5.45 -37.11 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -1.92 Total: 6.60 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.31 Total: -19.15 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 1.61 Total: -50.76 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -2.03 Total: -50.54 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 59.01 SS G_CDS: -0.61 Total: 58.39 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.66 -5.45 -37.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712810759.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.253 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds