Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38604 * 120.07835 * 2 1 4 4 C 1.38885 * 117.97134 * 179.97438 * 3 2 1 5 5 C 1.38619 * 117.96585 * 0.02562 * 4 3 2 6 6 S 1.76200 * 120.07578 * 179.97438 * 5 4 3 7 7 O 1.42093 * 106.39918 * 263.53564 * 6 5 4 8 8 O 1.42103 * 106.40284 * 36.45474 * 6 5 4 9 9 N 1.65591 * 107.21663 * 149.99562 * 6 5 4 10 10 C 1.36936 * 120.00072 * 64.99846 * 9 6 5 11 11 H 1.07999 * 120.00186 * 0.02562 * 10 9 6 12 12 C 1.38815 * 120.00029 * 179.97438 * 10 9 6 13 13 N 1.31617 * 120.00164 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99961 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47266 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47213 * 120.00398 * 14 12 10 17 17 H 1.48504 * 109.47481 * 240.00532 * 14 12 10 18 18 N 1.31929 * 119.84383 * 359.97438 * 5 4 3 19 19 N 1.28344 * 122.18738 * 0.02562 * 18 5 4 20 20 H 1.09000 * 109.47104 * 90.00110 * 1 2 3 21 21 H 1.09001 * 109.47210 * 210.00250 * 1 2 3 22 22 H 1.09010 * 109.46818 * 329.99984 * 1 2 3 23 23 H 1.07997 * 121.01707 * 0.02562 * 3 2 1 24 24 H 1.07994 * 121.01675 * 179.72435 * 4 3 2 25 25 H 0.97006 * 120.00264 * 244.99807 * 9 6 5 26 26 H 0.97000 * 120.00523 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0991 0.0005 6 16 5.9514 -0.2286 0.0005 7 8 6.3402 -0.4111 -1.3540 8 8 6.4322 0.8353 0.8105 9 7 6.3395 -1.6307 0.7914 10 6 5.9735 -2.8394 0.2619 11 1 5.4322 -2.8782 -0.6718 12 6 6.2993 -4.0148 0.9247 13 7 6.9595 -3.9675 2.0623 14 14 5.7995 -5.6635 0.2027 15 1 5.0719 -5.4450 -1.0733 16 1 7.0131 -6.4800 -0.0537 17 1 4.9166 -6.3763 1.1606 18 7 3.4508 -1.1890 0.0005 19 7 2.1682 -1.1417 0.0000 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.6797 2.1448 0.0004 24 1 4.1797 2.0528 -0.0039 25 1 6.8261 -1.5959 1.6299 26 1 7.1869 -4.7888 2.5257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712810759.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -45.253217 kcal Electronic energy + Delta-G solvation = -15382.801977 eV Core-core repulsion = 12588.134590 eV Total energy + Delta-G solvation = -2794.667387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03876 -38.07139 -36.80777 -36.55679 -35.02369 -34.26231 -32.88412 -29.35785 -26.47212 -26.00963 -24.23283 -20.68316 -20.09661 -19.37325 -18.50150 -17.93371 -16.78390 -16.72138 -16.34763 -16.01659 -15.44411 -15.26908 -14.27470 -13.89694 -13.84613 -13.33702 -13.22679 -13.13883 -13.06800 -13.03372 -12.89251 -12.29550 -12.06620 -11.86890 -11.52484 -11.45057 -10.97774 -10.84329 -10.20434 -8.36245 -5.82573 -0.57321 -0.40214 -0.27926 1.50320 1.51376 1.64087 2.09200 2.28422 2.52023 2.67798 3.09615 3.23122 3.42816 3.59812 3.73232 3.91744 3.96182 4.44933 4.48664 4.71431 4.90701 4.97429 5.14977 5.27441 5.59209 6.74008 6.87613 7.29661 7.48632 8.81516 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.009823 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.283379 B = 2849.897721 C = 3716.954336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.086 3.914 3 C -0.116 4.116 4 C -0.064 4.064 5 C -0.517 4.517 6 S 2.652 3.348 7 O -0.985 6.985 8 O -0.999 6.999 9 N -0.947 5.947 10 C -0.272 4.272 11 H 0.105 0.895 12 C -0.015 4.015 13 N -0.915 5.915 14 Si 0.983 3.017 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.276 1.276 18 N -0.169 5.169 19 N -0.297 5.297 20 H 0.105 0.895 21 H 0.080 0.920 22 H 0.117 0.883 23 H 0.212 0.788 24 H 0.184 0.816 25 H 0.409 0.591 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 9.126 -2.456 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.742 4.742 6 S 2.739 3.261 7 O -0.975 6.975 8 O -0.988 6.988 9 N -0.699 5.699 10 C -0.411 4.411 11 H 0.123 0.877 12 C -0.218 4.218 13 N -0.558 5.558 14 Si 0.807 3.193 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.202 1.202 18 N -0.012 5.012 19 N -0.142 5.142 20 H 0.123 0.877 21 H 0.098 0.902 22 H 0.136 0.864 23 H 0.229 0.771 24 H 0.201 0.799 25 H 0.244 0.756 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.865 8.124 -2.907 14.671 hybrid contribution -0.296 0.434 0.499 0.725 sum -12.161 8.558 -2.408 15.065 Atomic orbital electron populations 1.20952 0.83621 1.05805 1.05330 1.23988 1.01514 0.90293 0.89910 1.22903 0.93538 1.01685 0.96430 1.22542 0.97704 0.97542 0.91489 1.36094 1.30534 0.97742 1.09806 1.05228 0.74459 0.72434 0.73998 1.93482 1.81234 1.86413 1.36334 1.93437 1.80090 1.56010 1.69239 1.51554 1.61411 1.18641 1.38296 1.19584 1.33876 0.82770 1.04867 0.87689 1.26005 0.97080 1.02670 0.96042 1.69775 1.39174 1.30214 1.16660 0.85011 0.78163 0.77547 0.78613 1.18697 1.19877 1.20198 1.73324 0.99927 1.25518 1.02442 1.72995 1.02019 1.27361 1.11845 0.87683 0.90159 0.86437 0.77075 0.79912 0.75628 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.20 71.24 0.73 -0.76 15 2 C 0.09 2.30 6.87 42.63 0.29 2.59 15 3 C -0.12 -2.62 9.88 22.51 0.22 -2.40 15 4 C -0.06 -1.94 9.70 22.52 0.22 -1.73 15 5 C -0.52 -21.20 6.85 84.77 0.58 -20.62 15 6 S 2.65 120.78 5.72 -56.49 -0.32 120.46 15 7 O -0.98 -49.63 17.72 -128.00 -2.27 -51.90 15 8 O -1.00 -45.36 17.72 -128.00 -2.27 -47.63 15 9 N -0.95 -48.26 5.74 -54.26 -0.31 -48.57 15 10 C -0.27 -14.68 8.73 84.03 0.73 -13.95 15 11 H 0.11 5.67 7.68 -2.91 -0.02 5.65 15 12 C -0.01 -0.79 5.50 84.86 0.47 -0.32 15 13 N -0.91 -50.53 13.06 21.65 0.28 -50.25 15 14 Si 0.98 42.95 29.55 68.60 2.03 44.98 15 15 H -0.26 -11.28 7.11 99.48 0.71 -10.58 15 16 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 18 N -0.17 -7.52 10.31 -55.21 -0.57 -8.09 15 19 N -0.30 -11.41 11.43 -47.63 -0.54 -11.96 15 20 H 0.10 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.12 0.90 8.09 -2.38 -0.02 0.88 15 23 H 0.21 2.13 8.06 -2.91 -0.02 2.11 15 24 H 0.18 4.35 8.00 -2.91 -0.02 4.33 15 25 H 0.41 20.96 8.02 -96.74 -0.78 20.19 15 26 H 0.28 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -73.13 254.73 -0.29 -73.42 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.45 Total: 16.72 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.24 Total: -37.18 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -1.14 Total: -118.87 kcal Atomic # 8 Polarization: -94.99 SS G_CDS: -4.54 Total: -99.53 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 120.78 SS G_CDS: -0.32 Total: 120.46 kcal Total: -73.13 -0.29 -73.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712810759.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.166 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds