Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46909 * 111.00149 * 2 1 4 4 C 1.46905 * 111.00145 * 123.95148 * 2 1 3 5 5 C 1.52997 * 109.46784 * 78.33024 * 4 2 1 6 6 O 1.42907 * 110.64552 * 52.82859 * 5 4 2 7 7 C 1.54600 * 110.72050 * 175.97210 * 5 4 2 8 8 C 1.53996 * 105.13862 * 140.49547 * 7 5 4 9 9 N 1.47905 * 107.05567 * 1.22555 * 8 7 5 10 10 C 1.46896 * 111.00222 * 214.15180 * 9 8 7 11 11 C 1.52999 * 109.47620 * 176.14109 * 10 9 8 12 12 C 1.50702 * 109.47349 * 174.52100 * 11 10 9 13 13 H 1.07993 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99741 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00376 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47152 * 89.99637 * 16 14 12 18 18 H 1.48500 * 109.47350 * 209.99759 * 16 14 12 19 19 H 1.48499 * 109.46836 * 329.99929 * 16 14 12 20 20 C 1.48530 * 105.82302 * 334.66939 * 9 8 7 21 21 H 1.09004 * 109.47425 * 286.92376 * 1 2 3 22 22 H 1.09002 * 109.47490 * 46.92145 * 1 2 3 23 23 H 1.08999 * 109.47665 * 166.91811 * 1 2 3 24 24 H 1.08999 * 109.47127 * 183.95300 * 3 2 1 25 25 H 1.08999 * 109.46607 * 303.95127 * 3 2 1 26 26 H 1.08994 * 109.46930 * 63.95045 * 3 2 1 27 27 H 1.08995 * 109.46686 * 318.33601 * 4 2 1 28 28 H 1.08995 * 109.47070 * 198.33705 * 4 2 1 29 29 H 0.96696 * 114.00061 * 66.46230 * 6 5 4 30 30 H 1.08995 * 110.30882 * 21.58444 * 7 5 4 31 31 H 1.08997 * 110.39397 * 259.45401 * 7 5 4 32 32 H 1.08997 * 109.92059 * 241.87662 * 8 7 5 33 33 H 1.08995 * 110.08326 * 120.67006 * 8 7 5 34 34 H 1.09002 * 109.46841 * 56.14386 * 10 9 8 35 35 H 1.09004 * 109.47494 * 296.14997 * 10 9 8 36 36 H 1.09009 * 109.46757 * 54.52009 * 11 10 9 37 37 H 1.08997 * 109.46896 * 294.52896 * 11 10 9 38 38 H 0.96997 * 120.00254 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.66487 * 157.63763 * 20 9 8 40 40 H 1.08995 * 110.66813 * 280.77385 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.9057 -2.2620 0.8303 6 8 2.5266 -2.5571 -0.4226 7 6 2.5447 -3.0931 1.9666 8 6 1.6240 -4.3156 2.1374 9 7 0.5470 -4.1916 1.1312 10 6 -0.7200 -4.7264 1.6475 11 6 -1.8286 -4.4940 0.6190 12 6 -3.0966 -5.1599 1.0879 13 1 -3.1105 -5.6949 2.0258 14 6 -4.2388 -5.0860 0.3194 15 7 -4.2221 -4.4340 -0.8227 16 14 -5.8108 -5.9108 0.9009 17 1 -6.5982 -4.9541 1.7194 18 1 -6.6128 -6.3329 -0.2755 19 1 -5.4709 -7.1011 1.7211 20 6 0.4320 -2.7400 0.8380 21 1 -0.3634 0.2992 0.9832 22 1 -0.3634 0.7019 -0.7506 23 1 -0.3634 -1.0009 -0.2326 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8525 26 1 1.7043 1.8724 0.9232 27 1 1.4089 -0.5423 2.0287 28 1 3.0362 -0.4920 1.3096 29 1 3.4833 -2.4172 -0.4301 30 1 2.5769 -2.5121 2.8882 31 1 3.5485 -3.4119 1.6857 32 1 1.1965 -4.3214 3.1400 33 1 2.1860 -5.2341 1.9683 34 1 -0.9758 -4.2198 2.5781 35 1 -0.6145 -5.7953 1.8329 36 1 -1.5291 -4.9172 -0.3399 37 1 -2.0006 -3.4236 0.5058 38 1 -5.0256 -4.3823 -1.3635 39 1 -0.0295 -2.5798 -0.1364 40 1 -0.1327 -2.2331 1.6204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713663672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = -35.192914 kcal Electronic energy + Delta-G solvation = -18481.254331 eV Core-core repulsion = 15717.195515 eV Total energy + Delta-G solvation = -2764.058816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62554 -36.88727 -35.42024 -33.25193 -31.46758 -29.39786 -28.51509 -27.38643 -26.18922 -24.13642 -21.96374 -21.17999 -20.28482 -19.72897 -16.85281 -16.26628 -15.66465 -15.26096 -15.02579 -14.68448 -14.43529 -14.16907 -13.83908 -13.27486 -12.85395 -12.76044 -12.32690 -12.16390 -12.00356 -11.82555 -11.56981 -11.50425 -11.28409 -11.05399 -10.88409 -10.69722 -10.46869 -10.22248 -9.85188 -9.70364 -9.31425 -9.08602 -8.31382 -8.25932 -7.73802 -5.96029 -3.98663 3.33871 3.40208 3.43678 3.83989 4.42378 4.51014 4.59955 4.68018 4.88620 5.04750 5.15224 5.24008 5.31392 5.39651 5.41459 5.54683 5.66041 5.68402 5.76658 5.78031 5.92984 5.95130 6.05959 6.14194 6.17982 6.31787 6.44550 6.59302 6.97354 7.01460 7.05578 7.49183 7.54319 7.76941 7.92483 8.02405 8.12118 8.46552 9.08331 9.64794 11.15292 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.005782 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.223136 B = 4841.368627 C = 5542.204901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.532 5.532 3 C 0.025 3.975 4 C 0.036 3.964 5 C 0.135 3.865 6 O -0.523 6.523 7 C -0.156 4.156 8 C 0.037 3.963 9 N -0.511 5.511 10 C 0.053 3.947 11 C 0.027 3.973 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.058 3.942 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.363 0.637 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.100 0.900 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.466 9.130 5.022 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.255 5.255 3 C -0.123 4.123 4 C -0.094 4.094 5 C 0.093 3.907 6 O -0.326 6.326 7 C -0.195 4.195 8 C -0.092 4.092 9 N -0.235 5.235 10 C -0.074 4.074 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.070 4.070 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.209 0.791 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.993 8.492 3.808 16.806 hybrid contribution -0.870 0.606 2.067 2.323 sum 13.123 9.099 5.875 17.015 Atomic orbital electron populations 1.22798 0.86572 1.04518 0.99905 1.61839 1.08528 1.12749 1.42415 1.22414 1.00356 0.89326 1.00231 1.22795 0.99979 0.94626 0.91956 1.22025 0.94279 0.90523 0.83894 1.86697 1.23913 1.89963 1.32040 1.23127 0.99916 0.97424 0.99007 1.22788 0.93934 0.97883 0.94548 1.64893 1.06406 1.14032 1.38189 1.22535 0.88657 0.98779 0.97439 1.19100 0.90740 0.96981 0.94233 1.21183 0.95209 1.33784 1.05891 0.92824 1.24988 0.98882 0.95479 0.94913 1.69973 1.28599 1.42084 1.12468 0.86607 0.83442 0.79796 0.78217 1.20770 1.21180 1.19895 1.23320 0.92785 0.88691 1.02198 0.95767 0.91583 0.89227 0.91732 0.91355 0.96178 0.93832 0.90991 0.79121 0.91317 0.90654 0.94347 0.90813 0.96378 0.91785 0.95461 0.96747 0.93001 0.88239 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.94 60.06 0.54 0.67 16 2 N -0.53 -6.96 4.69 -251.26 -1.18 -8.14 16 3 C 0.03 0.26 9.48 60.07 0.57 0.83 16 4 C 0.04 0.43 4.36 -3.82 -0.02 0.41 16 5 C 0.14 1.92 1.09 -88.76 -0.10 1.82 16 6 O -0.52 -7.92 12.89 -35.23 -0.45 -8.37 16 7 C -0.16 -1.93 6.25 -25.37 -0.16 -2.09 16 8 C 0.04 0.57 6.70 -2.75 -0.02 0.55 16 9 N -0.51 -9.97 5.35 -230.46 -1.23 -11.21 16 10 C 0.05 1.17 4.77 -3.83 -0.02 1.15 16 11 C 0.03 0.72 4.66 -27.88 -0.13 0.59 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 C 0.06 1.04 2.75 -1.90 -0.01 1.03 16 21 H 0.02 0.32 7.86 -51.93 -0.41 -0.09 16 22 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 23 H 0.09 1.49 4.69 -51.93 -0.24 1.24 16 24 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 25 H 0.07 0.66 8.02 -51.93 -0.42 0.24 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 29 H 0.36 3.85 9.01 45.56 0.41 4.27 16 30 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 31 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 32 H 0.04 0.57 7.67 -51.93 -0.40 0.17 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.39 7.98 -51.93 -0.41 -0.03 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.01 0.40 7.21 -51.93 -0.37 0.02 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.10 2.07 5.93 -51.93 -0.31 1.76 16 40 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -32.25 312.70 -8.43 -40.68 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.25 Total: 0.71 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 0.25 Total: -8.79 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.68 Total: -45.83 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.45 Total: -8.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.25 -8.43 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713663672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.485 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds