Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46909 * 111.00149 * 2 1 4 4 C 1.46905 * 111.00145 * 123.95148 * 2 1 3 5 5 C 1.52997 * 109.46784 * 78.33024 * 4 2 1 6 6 O 1.42907 * 110.64552 * 52.82859 * 5 4 2 7 7 C 1.54600 * 110.72050 * 175.97210 * 5 4 2 8 8 C 1.53996 * 105.13862 * 140.49547 * 7 5 4 9 9 N 1.47905 * 107.05567 * 1.22555 * 8 7 5 10 10 C 1.46896 * 111.00222 * 214.15180 * 9 8 7 11 11 C 1.52999 * 109.47620 * 176.14109 * 10 9 8 12 12 C 1.50702 * 109.47349 * 174.52100 * 11 10 9 13 13 H 1.07993 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99741 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00376 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47152 * 89.99637 * 16 14 12 18 18 H 1.48500 * 109.47350 * 209.99759 * 16 14 12 19 19 H 1.48499 * 109.46836 * 329.99929 * 16 14 12 20 20 C 1.48530 * 105.82302 * 334.66939 * 9 8 7 21 21 H 1.09004 * 109.47425 * 286.92376 * 1 2 3 22 22 H 1.09002 * 109.47490 * 46.92145 * 1 2 3 23 23 H 1.08999 * 109.47665 * 166.91811 * 1 2 3 24 24 H 1.08999 * 109.47127 * 183.95300 * 3 2 1 25 25 H 1.08999 * 109.46607 * 303.95127 * 3 2 1 26 26 H 1.08994 * 109.46930 * 63.95045 * 3 2 1 27 27 H 1.08995 * 109.46686 * 318.33601 * 4 2 1 28 28 H 1.08995 * 109.47070 * 198.33705 * 4 2 1 29 29 H 0.96696 * 114.00061 * 66.46230 * 6 5 4 30 30 H 1.08995 * 110.30882 * 21.58444 * 7 5 4 31 31 H 1.08997 * 110.39397 * 259.45401 * 7 5 4 32 32 H 1.08997 * 109.92059 * 241.87662 * 8 7 5 33 33 H 1.08995 * 110.08326 * 120.67006 * 8 7 5 34 34 H 1.09002 * 109.46841 * 56.14386 * 10 9 8 35 35 H 1.09004 * 109.47494 * 296.14997 * 10 9 8 36 36 H 1.09009 * 109.46757 * 54.52009 * 11 10 9 37 37 H 1.08997 * 109.46896 * 294.52896 * 11 10 9 38 38 H 0.96997 * 120.00254 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.66487 * 157.63763 * 20 9 8 40 40 H 1.08995 * 110.66813 * 280.77385 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.9057 -2.2620 0.8303 6 8 2.5266 -2.5571 -0.4226 7 6 2.5447 -3.0931 1.9666 8 6 1.6240 -4.3156 2.1374 9 7 0.5470 -4.1916 1.1312 10 6 -0.7200 -4.7264 1.6475 11 6 -1.8286 -4.4940 0.6190 12 6 -3.0966 -5.1599 1.0879 13 1 -3.1105 -5.6949 2.0258 14 6 -4.2388 -5.0860 0.3194 15 7 -4.2221 -4.4340 -0.8227 16 14 -5.8108 -5.9108 0.9009 17 1 -6.5982 -4.9541 1.7194 18 1 -6.6128 -6.3329 -0.2755 19 1 -5.4709 -7.1011 1.7211 20 6 0.4320 -2.7400 0.8380 21 1 -0.3634 0.2992 0.9832 22 1 -0.3634 0.7019 -0.7506 23 1 -0.3634 -1.0009 -0.2326 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9163 -0.8525 26 1 1.7043 1.8724 0.9232 27 1 1.4089 -0.5423 2.0287 28 1 3.0362 -0.4920 1.3096 29 1 3.4833 -2.4172 -0.4301 30 1 2.5769 -2.5121 2.8882 31 1 3.5485 -3.4119 1.6857 32 1 1.1965 -4.3214 3.1400 33 1 2.1860 -5.2341 1.9683 34 1 -0.9758 -4.2198 2.5781 35 1 -0.6145 -5.7953 1.8329 36 1 -1.5291 -4.9172 -0.3399 37 1 -2.0006 -3.4236 0.5058 38 1 -5.0256 -4.3823 -1.3635 39 1 -0.0295 -2.5798 -0.1364 40 1 -0.1327 -2.2331 1.6204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713663672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = -62.022633 kcal Electronic energy + Delta-G solvation = -18482.417755 eV Core-core repulsion = 15717.195515 eV Total energy + Delta-G solvation = -2765.222240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84092 -38.07327 -36.68829 -35.26867 -33.11538 -30.73348 -30.00982 -28.54066 -27.43194 -25.97783 -23.36830 -22.41356 -21.62930 -21.24414 -18.63518 -17.79362 -16.91872 -16.54797 -16.35359 -16.21460 -15.82031 -15.40102 -15.14793 -14.74456 -14.35197 -14.02346 -13.75317 -13.69419 -13.33985 -13.20606 -12.87753 -12.73969 -12.67803 -12.55808 -12.37620 -12.24294 -12.03932 -11.72767 -11.45198 -11.29850 -11.24405 -10.76086 -10.57459 -9.26005 -9.23396 -8.20903 -6.33599 1.38833 1.41199 1.52480 2.39462 2.84977 3.11933 3.17440 3.44710 3.61518 3.72199 3.97736 4.20377 4.25936 4.31034 4.40020 4.44614 4.53394 4.54983 4.60692 4.71621 4.75034 4.77128 4.89001 4.90516 4.96434 5.00620 5.02022 5.13920 5.23260 5.42727 5.58659 5.76937 6.02121 6.02882 6.12667 6.19165 6.29861 6.83075 7.13614 7.35860 8.91398 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.005782 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.223136 B = 4841.368627 C = 5542.204901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.549 5.549 3 C 0.026 3.974 4 C 0.040 3.960 5 C 0.142 3.858 6 O -0.549 6.549 7 C -0.143 4.143 8 C 0.031 3.969 9 N -0.534 5.534 10 C 0.070 3.930 11 C 0.038 3.962 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.059 3.941 21 H 0.027 0.973 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.384 0.616 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.063 0.937 36 H -0.013 1.013 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.058 0.942 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.840 9.486 6.791 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.273 5.273 3 C -0.122 4.122 4 C -0.089 4.089 5 C 0.099 3.901 6 O -0.356 6.356 7 C -0.182 4.182 8 C -0.097 4.097 9 N -0.258 5.258 10 C -0.058 4.058 11 C 0.001 3.999 12 C -0.585 4.585 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.069 4.069 21 H 0.045 0.955 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.005 0.995 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.407 8.857 5.590 18.630 hybrid contribution -1.258 0.512 1.443 1.982 sum 14.149 9.369 7.033 18.369 Atomic orbital electron populations 1.22653 0.88007 1.02532 1.00205 1.61799 1.07452 1.14746 1.43279 1.22468 1.01339 0.87627 1.00736 1.22784 1.01828 0.92775 0.91466 1.21936 0.91458 0.92301 0.84383 1.86645 1.25883 1.90282 1.32764 1.23099 1.00087 0.95708 0.99268 1.22928 0.93128 0.99991 0.93616 1.64777 1.05988 1.15046 1.40014 1.22167 0.88792 0.98965 0.95863 1.18889 0.92387 0.94882 0.93790 1.21609 0.96242 1.34197 1.06401 0.92033 1.26005 1.02920 0.95934 0.94832 1.70128 1.29876 1.43329 1.13843 0.85391 0.78362 0.79000 0.77936 1.19571 1.20670 1.18617 1.23200 0.95898 0.88106 0.99697 0.95456 0.90982 0.92692 0.89856 0.91262 0.95334 0.93734 0.87645 0.76698 0.88703 0.87961 0.93651 0.90109 0.95812 0.91857 0.99491 0.99143 0.92719 0.92387 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.42 8.94 127.69 1.14 1.56 16 2 N -0.55 -13.77 4.69 -948.86 -4.45 -18.23 16 3 C 0.03 0.47 9.48 127.69 1.21 1.68 16 4 C 0.04 0.88 4.36 86.30 0.38 1.26 16 5 C 0.14 3.82 1.09 -9.59 -0.01 3.81 16 6 O -0.55 -16.01 12.89 -148.98 -1.92 -17.93 16 7 C -0.14 -3.07 6.25 31.48 0.20 -2.87 16 8 C 0.03 0.90 6.70 86.45 0.58 1.48 16 9 N -0.53 -21.23 5.35 -883.03 -4.72 -25.96 16 10 C 0.07 3.18 4.77 86.30 0.41 3.60 16 11 C 0.04 2.15 4.66 29.85 0.14 2.29 16 12 C -0.55 -32.39 9.11 25.60 0.23 -32.15 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 14 C 0.00 0.06 5.46 84.65 0.46 0.53 16 15 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 16 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.06 2.20 2.75 86.65 0.24 2.44 16 21 H 0.03 0.74 7.86 -2.39 -0.02 0.73 16 22 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 23 H 0.05 1.99 4.69 -2.39 -0.01 1.98 16 24 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 25 H 0.07 1.23 8.02 -2.39 -0.02 1.21 16 26 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.04 0.98 7.66 -2.39 -0.02 0.96 16 28 H 0.11 1.63 7.84 -2.39 -0.02 1.62 16 29 H 0.38 7.18 9.01 -74.06 -0.67 6.51 16 30 H 0.09 1.59 7.85 -2.39 -0.02 1.57 16 31 H 0.10 1.69 8.01 -2.39 -0.02 1.67 16 32 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.02 1.04 7.98 -2.39 -0.02 1.02 16 35 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 36 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 37 H -0.01 -0.59 7.21 -2.39 -0.02 -0.61 16 38 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.06 2.64 5.93 -2.39 -0.01 2.63 16 40 H 0.04 1.59 7.70 -2.39 -0.02 1.57 16 Total: -1.00 -72.66 312.70 -3.48 -76.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.33 Total: 13.55 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.98 Total: -16.39 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -8.89 Total: -102.68 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.92 Total: -17.93 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.66 -3.48 -76.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713663672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds