Wall clock time and date at job start Mon Mar 30 2020 04:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34798 * 116.99812 * 2 1 4 4 O 1.21558 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47115 * 119.99834 * 179.97438 * 3 2 1 6 6 C 1.35292 * 123.15247 * 180.02562 * 5 3 2 7 7 S 1.70938 * 108.82101 * 179.97438 * 6 5 3 8 8 C 1.70770 * 91.13714 * 0.02562 * 7 6 5 9 9 C 1.50696 * 124.71210 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47358 * 165.02106 * 9 8 7 11 11 O 1.42903 * 109.47131 * 45.01746 * 9 8 7 12 12 C 1.50707 * 109.47163 * 285.02549 * 9 8 7 13 13 H 1.07995 * 119.99310 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99931 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00169 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99871 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46796 * 60.00023 * 16 14 12 18 18 H 1.48494 * 109.47313 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47022 * 300.00169 * 16 14 12 20 20 N 1.28627 * 110.57981 * 0.24159 * 8 7 6 21 21 H 1.09000 * 109.47208 * 60.00734 * 1 2 3 22 22 H 1.09001 * 109.46897 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47572 * 300.00525 * 1 2 3 24 24 H 1.08005 * 125.59196 * 359.97198 * 6 5 3 25 25 H 0.96700 * 114.00311 * 300.00591 * 11 9 8 26 26 H 0.96998 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5331 1.2781 0.0006 6 6 4.2126 2.4479 0.0011 7 16 5.8887 2.1121 0.0024 8 6 5.5865 0.4313 0.0014 9 6 6.6538 -0.6325 0.0012 10 1 6.2102 -1.5923 0.2661 11 8 7.6631 -0.2947 0.9548 12 6 7.2702 -0.7255 -1.3709 13 1 6.9233 -0.0792 -2.1635 14 6 8.2768 -1.6357 -1.6141 15 7 8.6995 -2.4224 -0.6487 16 14 9.0404 -1.7514 -3.3150 17 1 9.6440 -0.4437 -3.6766 18 1 10.0922 -2.7996 -3.3152 19 1 7.9915 -2.1033 -4.3055 20 7 4.3213 0.1995 -0.0049 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.7689 3.4326 0.0008 25 1 8.1016 0.5495 0.7811 26 1 9.4074 -3.0629 -0.8199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757132422.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:30 Heat of formation + Delta-G solvation = -113.612253 kcal Electronic energy + Delta-G solvation = -14895.412684 eV Core-core repulsion = 12065.488276 eV Total energy + Delta-G solvation = -2829.924408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.82014 -40.34494 -37.83025 -37.51217 -34.36837 -32.25782 -29.27863 -29.13027 -26.69495 -25.21883 -22.61584 -21.03989 -20.00079 -19.18576 -18.16811 -17.55704 -17.53766 -16.86352 -16.73490 -15.71590 -15.49094 -15.07092 -14.74663 -14.23023 -14.10589 -13.43199 -13.09282 -13.01808 -12.90726 -12.75704 -12.13667 -12.03563 -11.87141 -11.72888 -10.96828 -10.79261 -10.61367 -10.45380 -9.91466 -8.19820 -6.48445 -0.59869 0.24104 0.57952 0.64377 1.45323 1.47040 1.55114 1.74833 2.01590 2.39030 2.97258 3.13565 3.84221 4.09323 4.15425 4.23506 4.24528 4.30232 4.63772 4.78686 5.11169 5.30362 5.58667 5.84850 6.32526 6.58800 6.72467 7.18421 7.34628 8.84599 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.006546 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.560602 B = 4276.205070 C = 4604.492888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.553 3.447 4 O -0.519 6.519 5 C -0.013 4.013 6 C -0.230 4.230 7 S 0.307 5.693 8 C 0.010 3.990 9 C 0.301 3.699 10 H 0.050 0.950 11 O -0.561 6.561 12 C -0.581 4.581 13 H 0.063 0.937 14 C 0.036 3.964 15 N -0.890 5.890 16 Si 0.964 3.036 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.274 1.274 20 N -0.468 5.468 21 H 0.069 0.931 22 H 0.130 0.870 23 H 0.071 0.929 24 H 0.217 0.783 25 H 0.362 0.638 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 9.220 0.150 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.396 3.604 4 O -0.409 6.409 5 C -0.147 4.147 6 C -0.372 4.372 7 S 0.567 5.433 8 C -0.270 4.270 9 C 0.240 3.760 10 H 0.067 0.933 11 O -0.364 6.364 12 C -0.619 4.619 13 H 0.082 0.918 14 C -0.168 4.168 15 N -0.526 5.526 16 Si 0.788 3.212 17 H -0.183 1.183 18 H -0.207 1.207 19 H -0.199 1.199 20 N -0.185 5.185 21 H 0.088 0.912 22 H 0.148 0.852 23 H 0.089 0.911 24 H 0.234 0.766 25 H 0.208 0.792 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.970 8.816 0.491 11.894 hybrid contribution -0.817 -0.071 -0.960 1.263 sum -8.787 8.745 -0.470 12.406 Atomic orbital electron populations 1.23682 0.73815 1.05997 1.03141 1.86721 1.25632 1.31408 1.83143 1.19895 0.86812 0.81798 0.71876 1.90810 1.66034 1.36225 1.47880 1.19496 0.92772 0.88993 1.13461 1.27003 0.99969 1.04227 1.06035 1.82329 1.00198 0.99928 1.60879 1.28841 0.95408 1.01490 1.01212 1.17777 0.80593 0.88348 0.89247 0.93264 1.86659 1.53825 1.42761 1.53174 1.21650 1.21252 1.23095 0.95918 0.91845 1.25840 0.96389 0.93788 1.00801 1.70174 1.27556 1.20965 1.33899 0.85530 0.77983 0.78627 0.79039 1.18319 1.20667 1.19900 1.66945 1.03435 1.32316 1.15775 0.91180 0.85164 0.91054 0.76611 0.79210 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 15 2 O -0.35 -11.77 10.50 -57.10 -0.60 -12.37 15 3 C 0.55 19.47 7.94 70.15 0.56 20.03 15 4 O -0.52 -17.99 16.51 19.65 0.32 -17.66 15 5 C -0.01 -0.48 6.71 40.53 0.27 -0.21 15 6 C -0.23 -6.88 10.62 67.14 0.71 -6.16 15 7 S 0.31 9.37 22.26 -56.49 -1.26 8.11 15 8 C 0.01 0.44 6.23 88.58 0.55 0.99 15 9 C 0.30 15.20 3.35 29.10 0.10 15.30 15 10 H 0.05 2.88 8.14 -2.39 -0.02 2.86 15 11 O -0.56 -27.24 12.68 -148.98 -1.89 -29.13 15 12 C -0.58 -30.37 8.75 25.60 0.22 -30.15 15 13 H 0.06 3.21 7.74 -2.91 -0.02 3.19 15 14 C 0.04 1.93 5.40 84.65 0.46 2.38 15 15 N -0.89 -50.44 12.84 21.45 0.28 -50.16 15 16 Si 0.96 41.07 29.54 68.60 2.03 43.10 15 17 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 20 N -0.47 -20.50 10.60 -180.91 -1.92 -22.42 15 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.13 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 15 24 H 0.22 4.93 8.03 -2.91 -0.02 4.91 15 25 H 0.36 14.64 8.45 -74.06 -0.63 14.01 15 26 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 Total: -1.00 -66.55 260.88 1.63 -64.92 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.60 Total: 11.66 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 4.07 Total: 3.95 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.64 Total: -72.58 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -2.17 Total: -59.16 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.26 Total: 8.11 kcal Total: -66.55 1.63 -64.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757132422.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.696 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds