Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.38463 * 119.99982 * 179.97438 * 11 10 9 13 13 N 1.32466 * 119.17292 * 359.73236 * 12 11 10 14 14 C 1.32463 * 120.89207 * 179.75779 * 13 12 11 15 15 C 1.38312 * 119.25025 * 0.50503 * 14 13 12 16 16 Cl 1.73598 * 120.75662 * 179.72787 * 15 14 13 17 17 C 1.39481 * 118.48639 * 359.75131 * 15 14 13 18 18 O 1.35541 * 120.46652 * 180.02562 * 17 15 14 19 19 N 1.32456 * 119.17378 * 180.02562 * 12 11 10 20 20 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 26 26 H 1.07993 * 120.37115 * 180.23335 * 14 13 12 27 27 H 0.96704 * 114.00059 * 269.97807 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0022 12 6 6.1787 -3.8357 -0.0018 13 7 5.4999 -4.9732 0.0051 14 6 6.1275 -6.1398 0.0010 15 6 7.5104 -6.1632 -0.0001 16 17 8.3728 -7.6698 0.0015 17 6 8.1964 -4.9487 -0.0021 18 8 9.5516 -4.9248 -0.0037 19 7 7.5032 -3.8166 -0.0023 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.6584 -3.1503 0.8892 24 1 3.6578 -3.1506 -0.8907 25 1 5.9715 -1.7966 -0.0025 26 1 5.5657 -7.0620 0.0028 27 1 9.9459 -4.9168 0.8793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307200385.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = 5.794606 kcal Electronic energy + Delta-G solvation = -14479.783172 eV Core-core repulsion = 11685.285679 eV Total energy + Delta-G solvation = -2794.497494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.13087 -38.04813 -36.72484 -35.90774 -33.44347 -32.90683 -30.99869 -29.18526 -25.20271 -24.45771 -22.84030 -20.89269 -19.20046 -18.26906 -17.20872 -16.63978 -16.33684 -15.68189 -14.78727 -14.40007 -14.13202 -14.07745 -13.69787 -12.66192 -12.44574 -12.36109 -11.59515 -11.44139 -11.34979 -11.13060 -10.78276 -10.57863 -10.21779 -9.99568 -9.70460 -9.40808 -9.21642 -8.65986 -7.91404 -6.15587 -4.16316 0.82749 0.96052 1.95351 2.81145 3.23376 3.31575 3.32488 3.43748 3.70587 4.21412 4.34360 4.61800 4.81675 5.17487 5.28012 5.77056 5.97416 6.10093 6.45905 6.59454 6.94594 7.12412 7.13248 7.15386 7.52241 7.60975 8.26965 8.39436 8.87811 9.44323 10.97113 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.058401 B = 0.004290 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.328583 B = 6524.626580 C = 6980.975363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.142 3.858 11 N -0.679 5.679 12 C 0.591 3.409 13 N -0.554 5.554 14 C 0.225 3.775 15 C -0.240 4.240 16 Cl -0.049 7.049 17 C 0.420 3.580 18 O -0.469 6.469 19 N -0.586 5.586 20 H 0.265 0.735 21 H 0.023 0.977 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.414 0.586 26 H 0.178 0.822 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.804 -11.730 1.759 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.020 3.980 11 N -0.311 5.311 12 C 0.234 3.766 13 N -0.278 5.278 14 C 0.056 3.944 15 C -0.278 4.278 16 Cl -0.021 7.021 17 C 0.228 3.772 18 O -0.276 6.276 19 N -0.320 5.320 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.251 0.749 26 H 0.195 0.805 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 15.947 -10.811 1.173 19.302 hybrid contribution 1.260 0.392 0.416 1.384 sum 17.208 -10.419 1.589 20.179 Atomic orbital electron populations 1.69894 1.06265 1.27133 1.50169 1.24984 0.94771 0.99148 0.94284 0.86768 0.80282 0.83553 0.78590 1.20178 1.21205 1.19072 1.20850 0.88335 0.94962 1.51997 0.90469 1.19827 0.98131 0.91114 0.97095 1.21661 0.73802 1.00458 1.02085 1.44992 1.08263 1.03222 1.74666 1.19214 0.83304 0.87493 0.86612 1.68218 1.39459 0.97097 1.23047 1.22928 0.88896 0.96359 0.86238 1.22422 0.94875 0.88512 1.21994 1.98342 1.76604 1.29657 1.97547 1.18734 0.84640 0.85736 0.88125 1.84714 1.13253 1.95497 1.34180 1.67479 1.08078 1.31006 1.25476 0.92481 0.95857 0.96279 0.91382 0.91447 0.74925 0.80471 0.73199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.04 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 15 7 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 15 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 15 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 15 10 C 0.14 2.72 5.59 -4.04 -0.02 2.70 15 11 N -0.68 -11.41 5.71 -62.31 -0.36 -11.76 15 12 C 0.59 9.66 8.43 -322.81 -2.72 6.94 15 13 N -0.55 -8.65 9.58 -13.97 -0.13 -8.79 15 14 C 0.23 2.78 11.10 -17.25 -0.19 2.58 15 15 C -0.24 -2.86 6.38 -39.09 -0.25 -3.11 15 16 Cl -0.05 -0.49 28.63 -51.86 -1.48 -1.98 15 17 C 0.42 5.47 7.83 -16.69 -0.13 5.34 15 18 O -0.47 -4.95 13.12 -18.32 -0.24 -5.19 15 19 N -0.59 -8.99 10.48 -13.96 -0.15 -9.14 15 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.02 0.51 7.20 -51.93 -0.37 0.14 15 22 H 0.02 0.42 7.57 -51.93 -0.39 0.02 15 23 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.41 6.41 8.59 -40.82 -0.35 6.05 15 26 H 0.18 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.41 2.23 9.06 45.56 0.41 2.64 15 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -31.15 261.36 -7.74 -38.88 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -1.56 Total: 2.75 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.86 Total: 1.13 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.14 Total: -55.73 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.24 Total: -5.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.15 -7.74 -38.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307200385.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.679 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds