Wall clock time and date at job start Mon Mar 30 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00271 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99488 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99436 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.40151 * 119.99656 * 179.72970 * 13 11 10 15 15 C 1.40396 * 125.96426 * 359.97438 * 14 13 11 16 16 C 1.35384 * 107.84834 * 180.02562 * 15 14 13 17 17 Cl 1.73597 * 126.08652 * 180.02562 * 16 15 14 18 18 N 1.35008 * 107.83214 * 359.97438 * 16 15 14 19 19 H 0.96995 * 125.98031 * 179.97438 * 18 16 15 20 20 N 1.31220 * 125.96213 * 179.69216 * 14 13 11 21 21 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 23 23 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 24 24 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 25 25 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 26 26 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 27 27 H 1.08002 * 126.07979 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2787 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4647 -7.3481 0.0106 15 6 0.0684 -7.4939 0.0111 16 6 -0.2105 -8.8187 0.0173 17 17 -1.7939 -9.5303 0.0199 18 7 0.9620 -9.4880 0.0201 19 1 1.0678 -10.4521 0.0248 20 7 1.9992 -8.5465 0.0105 21 1 -0.4850 0.8402 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 3.1356 -6.1344 0.0057 27 1 -0.6549 -6.6918 0.0080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812539001.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:54 Heat of formation + Delta-G solvation = 28.311530 kcal Electronic energy + Delta-G solvation = -14497.334661 eV Core-core repulsion = 11703.813574 eV Total energy + Delta-G solvation = -2793.521086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.46055 -39.25922 -37.06465 -34.68519 -33.55380 -31.37932 -30.24695 -29.94523 -25.94259 -22.75912 -21.98976 -20.61644 -19.70458 -18.43999 -17.03918 -16.35267 -15.74872 -15.62451 -14.71630 -14.45904 -14.09657 -13.69540 -13.38899 -12.76560 -12.22234 -12.18664 -11.85094 -11.24040 -10.96935 -10.85823 -10.83071 -10.65495 -10.03098 -9.72906 -9.32885 -9.14426 -8.89143 -8.47824 -8.34469 -5.99249 -4.04056 1.28476 1.46707 2.40880 2.45199 3.29211 3.33525 3.38431 3.39674 3.50569 4.45123 4.79306 5.20278 5.34122 5.36049 5.55983 6.06915 6.09944 6.25893 6.69255 6.79279 6.83748 7.14447 7.69493 7.77862 7.78709 8.01590 8.30603 8.48048 9.03410 9.59855 11.11547 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.052986 B = 0.004157 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.316381 B = 6733.226021 C = 7241.085902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.125 4.125 11 C 0.518 3.482 12 O -0.503 6.503 13 N -0.645 5.645 14 C 0.320 3.680 15 C -0.236 4.236 16 C 0.131 3.869 17 Cl -0.004 7.004 18 N -0.467 5.467 19 H 0.442 0.558 20 N -0.308 5.308 21 H 0.262 0.738 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.416 0.584 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -18.559 0.043 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.165 4.165 11 C 0.307 3.693 12 O -0.374 6.374 13 N -0.296 5.296 14 C 0.064 3.936 15 C -0.267 4.267 16 C -0.024 4.024 17 Cl 0.024 6.976 18 N -0.181 5.181 19 H 0.288 0.712 20 N -0.142 5.142 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.252 0.748 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.864 -19.008 0.041 19.099 hybrid contribution 0.146 0.600 0.001 0.617 sum 2.009 -18.408 0.041 18.517 Atomic orbital electron populations 1.69982 1.06053 1.26804 1.49870 1.25016 0.94837 0.99255 0.95198 0.86637 0.79537 0.83098 0.78569 1.20232 1.21287 1.20226 1.21148 0.92951 0.90867 1.51839 0.92519 1.18942 0.93123 0.89156 0.98910 1.21938 1.00914 0.90339 1.03283 1.21975 0.88844 0.84689 0.73809 1.90610 1.14323 1.86621 1.45894 1.43346 1.10653 1.01797 1.73827 1.19145 0.90846 0.86697 0.96910 1.21680 0.95661 0.94423 1.14949 1.21667 0.82738 0.91861 1.06098 1.98415 1.18472 1.83670 1.97057 1.45944 1.01333 1.08818 1.62041 0.71235 1.77490 1.08428 0.96195 1.32040 0.92824 0.95556 0.95549 0.89422 0.89437 0.74758 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 15 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 15 9 C 0.04 0.92 4.26 -27.88 -0.12 0.81 15 10 C -0.12 -2.33 5.64 -27.88 -0.16 -2.49 15 11 C 0.52 9.35 7.80 -10.98 -0.09 9.26 15 12 O -0.50 -10.85 13.11 5.55 0.07 -10.77 15 13 N -0.65 -9.40 5.45 -11.13 -0.06 -9.46 15 14 C 0.32 4.92 8.11 -154.40 -1.25 3.66 15 15 C -0.24 -3.67 9.59 -39.79 -0.38 -4.05 15 16 C 0.13 1.64 7.82 -17.17 -0.13 1.51 15 17 Cl 0.00 -0.04 29.31 -51.86 -1.52 -1.56 15 18 N -0.47 -5.25 7.35 32.75 0.24 -5.01 15 19 H 0.44 3.32 8.96 -182.62 -1.64 1.68 15 20 N -0.31 -4.26 12.72 31.43 0.40 -3.86 15 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 22 H 0.03 0.73 8.10 -51.93 -0.42 0.31 15 23 H 0.03 0.73 8.10 -51.93 -0.42 0.31 15 24 H 0.09 1.47 8.14 -51.92 -0.42 1.04 15 25 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 26 H 0.42 4.67 8.82 -40.82 -0.36 4.31 15 27 H 0.19 3.24 5.91 -52.49 -0.31 2.93 15 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -32.44 262.10 -7.28 -39.72 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.54 Total: 1.35 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.54 Total: -4.54 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 1.32 Total: -44.35 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.52 Total: -1.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.44 -7.28 -39.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812539001.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.031 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds