Wall clock time and date at job start Mon Mar 30 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 H 1.09004 * 109.47381 * 55.63191 * 3 2 1 5 5 C 1.50704 * 109.47752 * 175.63544 * 3 2 1 6 6 H 1.07994 * 120.00396 * 116.43812 * 5 3 2 7 7 C 1.37881 * 119.99564 * 296.45262 * 5 3 2 8 8 N 1.31515 * 120.00131 * 351.21124 * 7 5 3 9 9 Si 1.86799 * 119.99864 * 171.21860 * 7 5 3 10 10 H 1.48494 * 109.47001 * 179.97438 * 9 7 5 11 11 H 1.48492 * 109.47121 * 299.99622 * 9 7 5 12 12 H 1.48507 * 109.46955 * 59.99518 * 9 7 5 13 13 N 1.46905 * 109.47273 * 295.63556 * 3 2 1 14 14 C 1.47015 * 110.99501 * 318.93993 * 13 3 2 15 15 C 1.53096 * 109.25629 * 182.39127 * 14 13 3 16 16 H 1.09000 * 109.51097 * 63.08307 * 15 14 13 17 17 C 1.52995 * 109.54361 * 183.19215 * 15 14 13 18 18 O 1.42902 * 109.47339 * 184.79961 * 17 15 14 19 19 O 1.43018 * 109.25776 * 303.15021 * 15 14 13 20 20 C 1.43014 * 113.73651 * 58.66909 * 19 15 14 21 21 C 1.47011 * 110.99882 * 82.56924 * 13 3 2 22 22 H 1.08997 * 109.51073 * 297.54717 * 21 13 3 23 23 C 1.53003 * 109.50612 * 57.63255 * 21 13 3 24 24 H 1.09004 * 109.46926 * 317.71503 * 1 2 3 25 25 H 1.09001 * 109.47061 * 77.71507 * 1 2 3 26 26 H 1.08999 * 109.47258 * 197.71661 * 1 2 3 27 27 H 1.08996 * 109.47271 * 239.99852 * 2 1 3 28 28 H 1.09009 * 109.47011 * 119.99692 * 2 1 3 29 29 H 0.97000 * 119.99931 * 357.29311 * 8 7 5 30 30 H 1.08997 * 109.50589 * 302.32229 * 14 13 3 31 31 H 1.09000 * 109.50879 * 62.45812 * 14 13 3 32 32 H 1.08997 * 109.47752 * 304.80507 * 17 15 14 33 33 H 1.09003 * 109.46933 * 64.80798 * 17 15 14 34 34 H 0.96701 * 114.00278 * 179.97438 * 18 17 15 35 35 H 1.09007 * 109.50176 * 181.39220 * 20 19 15 36 36 H 1.09004 * 109.50795 * 61.26937 * 20 19 15 37 37 H 1.09004 * 109.46772 * 56.18782 * 23 21 13 38 38 H 1.08997 * 109.47278 * 176.18213 * 23 21 13 39 39 H 1.08997 * 109.47236 * 296.18864 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6142 1.9784 0.8483 5 6 3.5432 1.4439 0.1081 6 1 4.1422 1.8395 -0.6987 7 6 4.1536 0.9400 1.2371 8 7 3.4306 0.6186 2.2876 9 14 6.0074 0.7140 1.2745 10 1 6.4122 0.1616 2.5921 11 1 6.4135 -0.2247 0.1979 12 1 6.6704 2.0259 1.0634 13 7 1.6383 2.1039 -1.2487 14 6 1.7946 1.2000 -2.3975 15 6 1.4229 1.9463 -3.6815 16 1 2.1128 2.7766 -3.8326 17 6 1.5066 0.9894 -4.8723 18 8 1.2689 1.7121 -6.0819 19 8 0.0890 2.4490 -3.5656 20 6 -0.0987 3.3332 -2.4574 21 6 0.2575 2.6009 -1.1610 22 1 -0.4231 1.7616 -1.0183 23 6 0.1354 3.5644 0.0213 24 1 -0.3633 0.7603 0.6915 25 1 -0.3633 0.2187 -1.0041 26 1 -0.3634 -0.9789 0.3127 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.4729 0.7726 2.2828 30 1 2.8298 0.8644 -2.4583 31 1 1.1385 0.3382 -2.2745 32 1 2.4984 0.5386 -4.9073 33 1 0.7556 0.2069 -4.7630 34 1 1.3070 1.1671 -6.8798 35 1 -1.1399 3.6539 -2.4200 36 1 0.5469 4.2038 -2.5729 37 1 0.8628 4.3688 -0.0890 38 1 -0.8700 3.9845 0.0453 39 1 0.3267 3.0263 0.9497 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221117956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:15 Heat of formation + Delta-G solvation = -84.711642 kcal Electronic energy + Delta-G solvation = -19427.654642 eV Core-core repulsion = 16563.729871 eV Total energy + Delta-G solvation = -2863.924771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75317 -37.04707 -36.04099 -33.23077 -32.30680 -31.04000 -29.00606 -26.92740 -25.28310 -24.19182 -23.08639 -21.28622 -20.25218 -19.13266 -17.29415 -16.93297 -16.33964 -15.60588 -15.00759 -14.58198 -14.31558 -13.94212 -13.79072 -13.66877 -12.86137 -12.62402 -12.50902 -11.91385 -11.77950 -11.62871 -11.35844 -11.21163 -10.89426 -10.80049 -10.65953 -10.64285 -10.23377 -10.13099 -10.08246 -9.91923 -9.65023 -9.09862 -8.56551 -8.24693 -7.21525 -6.34999 -4.03882 3.43871 3.44702 3.63562 4.02908 4.16947 4.50675 4.80870 5.24056 5.26797 5.32456 5.37871 5.51595 5.54806 5.66061 5.72386 5.77374 5.89772 5.91645 5.96331 6.05742 6.13765 6.22064 6.27917 6.40507 6.46765 6.55856 6.69184 6.74884 6.93607 7.12656 7.29542 7.51226 7.66140 7.87974 8.03601 8.32263 8.60340 8.88096 9.64343 11.01388 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.008217 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.536486 B = 3406.936451 C = 3976.048823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.157 4.157 3 C 0.201 3.799 4 H 0.041 0.959 5 C -0.579 4.579 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.512 5.512 14 C 0.034 3.966 15 C 0.092 3.908 16 H 0.068 0.932 17 C 0.086 3.914 18 O -0.567 6.567 19 O -0.381 6.381 20 C 0.071 3.929 21 C 0.021 3.979 22 H 0.062 0.938 23 C -0.141 4.141 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.374 0.626 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 0.586 -9.867 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C 0.095 3.905 4 H 0.058 0.942 5 C -0.618 4.618 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.549 5.549 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.237 5.237 14 C -0.095 4.095 15 C 0.034 3.966 16 H 0.086 0.914 17 C 0.007 3.993 18 O -0.371 6.371 19 O -0.300 6.300 20 C -0.006 4.006 21 C -0.088 4.088 22 H 0.079 0.921 23 C -0.198 4.198 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.328 0.911 -8.680 9.741 hybrid contribution -1.518 -0.618 -0.951 1.895 sum -5.846 0.293 -9.631 11.270 Atomic orbital electron populations 1.22180 0.98860 1.00103 1.00190 1.22359 0.92401 1.02620 1.02277 1.19603 0.96450 0.87863 0.86608 0.94167 1.21884 0.90436 1.43957 1.05496 0.92709 1.25720 1.06619 0.94008 0.92082 1.70813 1.08650 1.45782 1.29683 0.83592 0.74656 0.76476 0.75880 1.20943 1.21590 1.21498 1.62508 1.18845 1.37843 1.04522 1.22577 1.02294 0.94535 0.90072 1.22196 0.84900 0.96354 0.93144 0.91421 1.22157 0.99663 0.93533 0.83902 1.86548 1.95124 1.39468 1.16004 1.87930 1.28973 1.64564 1.48551 1.22679 1.00600 0.92167 0.85182 1.22685 0.92534 0.98244 0.95341 0.92094 1.21790 1.00440 0.99557 0.98043 0.93295 0.93293 0.94359 0.93111 0.90966 0.92002 0.89352 0.94108 0.92012 0.93114 0.77959 0.89496 0.92920 0.91929 0.93209 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.09 37.16 0.30 -2.65 16 2 C -0.16 -3.51 4.56 -26.73 -0.12 -3.63 16 3 C 0.20 4.78 1.38 -68.86 -0.09 4.69 16 4 H 0.04 1.03 4.73 -51.93 -0.25 0.79 16 5 C -0.58 -15.63 8.21 -34.44 -0.28 -15.91 16 6 H 0.05 1.52 7.83 -52.49 -0.41 1.11 16 7 C 0.02 0.54 5.17 -17.82 -0.09 0.45 16 8 N -0.91 -26.44 12.83 55.43 0.71 -25.72 16 9 Si 1.07 24.73 29.91 -169.99 -5.08 19.65 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.51 -10.73 4.39 -219.79 -0.96 -11.70 16 14 C 0.03 0.65 3.64 -3.71 -0.01 0.63 16 15 C 0.09 1.60 3.09 -26.68 -0.08 1.51 16 16 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 17 C 0.09 1.20 6.72 37.15 0.25 1.45 16 18 O -0.57 -7.78 13.63 -39.95 -0.54 -8.33 16 19 O -0.38 -6.90 10.44 -39.95 -0.42 -7.32 16 20 C 0.07 1.18 6.29 37.21 0.23 1.41 16 21 C 0.02 0.38 2.04 -67.60 -0.14 0.24 16 22 H 0.06 1.12 4.00 -51.93 -0.21 0.92 16 23 C -0.14 -2.41 8.88 37.16 0.33 -2.08 16 24 H 0.05 0.91 7.43 -51.93 -0.39 0.53 16 25 H 0.05 0.89 5.02 -51.93 -0.26 0.63 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.12 6.13 -51.93 -0.32 0.80 16 28 H 0.07 1.81 6.24 -51.92 -0.32 1.48 16 29 H 0.27 7.73 6.18 -40.82 -0.25 7.48 16 30 H 0.09 1.77 7.72 -51.93 -0.40 1.37 16 31 H 0.04 0.78 5.08 -51.93 -0.26 0.51 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.37 3.06 9.12 45.56 0.42 3.47 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.21 6.08 -51.93 -0.32 0.89 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -30.68 291.28 -6.77 -37.45 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.15 Total: 5.48 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 0.29 Total: -13.89 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.25 Total: -37.42 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.96 Total: -15.65 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.68 -6.77 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221117956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.266 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds