Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 H 1.09005 * 109.46838 * 304.85123 * 3 2 1 5 5 C 1.50699 * 109.47263 * 184.85714 * 3 2 1 6 6 H 1.08007 * 120.00128 * 239.99826 * 5 3 2 7 7 C 1.37877 * 120.00599 * 59.99259 * 5 3 2 8 8 N 1.31520 * 119.99260 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00492 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47188 * 60.00120 * 9 7 5 11 11 H 1.48498 * 109.47211 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47003 * 300.00104 * 9 7 5 13 13 N 1.46892 * 109.47310 * 64.85467 * 3 2 1 14 14 C 1.47014 * 111.00256 * 41.49036 * 13 3 2 15 15 C 1.53097 * 109.26046 * 177.60853 * 14 13 3 16 16 H 1.09001 * 109.54466 * 296.89269 * 15 14 13 17 17 C 1.52994 * 109.50803 * 176.78570 * 15 14 13 18 18 O 1.42898 * 109.47450 * 175.21707 * 17 15 14 19 19 O 1.43019 * 109.25945 * 56.84847 * 15 14 13 20 20 C 1.43019 * 113.73843 * 301.33296 * 19 15 14 21 21 C 1.47016 * 110.99882 * 277.85589 * 13 3 2 22 22 H 1.09000 * 109.50556 * 62.46102 * 21 13 3 23 23 C 1.52997 * 109.54435 * 302.34655 * 21 13 3 24 24 H 1.08993 * 109.47155 * 279.58338 * 1 2 3 25 25 H 1.09000 * 109.46596 * 39.58344 * 1 2 3 26 26 H 1.09004 * 109.46925 * 159.57852 * 1 2 3 27 27 H 1.09001 * 109.47293 * 239.99122 * 2 1 3 28 28 H 1.09002 * 109.47083 * 119.99623 * 2 1 3 29 29 H 0.97004 * 119.99766 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.50552 * 57.67420 * 14 13 3 31 31 H 1.08999 * 109.50632 * 297.54570 * 14 13 3 32 32 H 1.08999 * 109.47205 * 55.21266 * 17 15 14 33 33 H 1.09009 * 109.47222 * 295.21641 * 17 15 14 34 34 H 0.96699 * 114.00005 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.50316 * 178.60573 * 20 19 15 36 36 H 1.09000 * 109.50080 * 298.73346 * 20 19 15 37 37 H 1.09000 * 109.47056 * 307.66740 * 23 21 13 38 38 H 1.09004 * 109.46998 * 67.66618 * 23 21 13 39 39 H 1.09003 * 109.47356 * 187.66707 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6074 1.9807 -0.8434 5 6 3.5422 1.4441 -0.1203 6 1 4.1457 1.8894 0.6569 7 6 4.1463 0.8772 -1.2224 8 7 3.4114 0.3354 -2.1690 9 14 6.0084 0.8786 -1.3712 10 1 6.5973 0.1449 -0.2223 11 1 6.4042 0.2142 -2.6388 12 1 6.5039 2.2786 -1.3709 13 7 1.6485 2.1003 1.2537 14 6 1.8236 1.1966 2.3999 15 6 1.4619 1.9397 3.6887 16 1 2.1481 2.7741 3.8334 17 6 1.5650 0.9815 4.8770 18 8 1.3362 1.7010 6.0903 19 8 0.1235 2.4339 3.5885 20 6 -0.0825 3.3178 2.4831 21 6 0.2636 2.5887 1.1822 22 1 -0.4132 1.7451 1.0466 23 6 0.1212 3.5528 0.0028 24 1 -0.3633 0.1711 1.0132 25 1 -0.3632 0.7920 -0.6549 26 1 -0.3633 -0.9631 -0.3586 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8363 -0.0632 -2.9446 30 1 2.8616 0.8675 2.4487 31 1 1.1717 0.3308 2.2838 32 1 2.5600 0.5371 4.9002 33 1 0.8178 0.1944 4.7750 34 1 1.3860 1.1549 6.8868 35 1 -1.1260 3.6318 2.4579 36 1 0.5590 4.1923 2.5920 37 1 0.8888 4.3237 0.0690 38 1 0.2374 3.0036 -0.9316 39 1 -0.8642 4.0179 0.0307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251311165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -104.999279 kcal Electronic energy + Delta-G solvation = -19385.038942 eV Core-core repulsion = 16520.234433 eV Total energy + Delta-G solvation = -2864.804509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11855 -38.27230 -37.22305 -34.81261 -33.74135 -32.63357 -30.45578 -28.78985 -26.93905 -25.59633 -24.73683 -22.56737 -21.73751 -20.50139 -18.52649 -18.22707 -17.53756 -17.14083 -16.39042 -16.29687 -15.89840 -15.66167 -15.13777 -14.81876 -14.47497 -14.06073 -13.85502 -13.26840 -13.22060 -13.09032 -12.92173 -12.73140 -12.57899 -12.47271 -12.24554 -12.08990 -11.93421 -11.82151 -11.37291 -11.28362 -10.94326 -10.88830 -10.44243 -10.28769 -8.75122 -8.07420 -6.17259 1.42681 1.43634 1.51044 2.43511 2.81028 3.02770 3.20474 3.52748 3.97201 4.09551 4.14095 4.23252 4.34303 4.39472 4.44056 4.48132 4.56805 4.61746 4.66795 4.74146 4.75213 4.92033 4.98044 5.03129 5.06866 5.11834 5.23305 5.39890 5.45668 5.62596 5.76105 5.83164 6.21816 6.31041 6.52802 6.74221 6.93871 6.95308 7.51143 8.96975 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.008139 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.769334 B = 3439.445515 C = 3978.468208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.220 3.780 4 H 0.024 0.976 5 C -0.512 4.512 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.040 3.960 15 C 0.094 3.906 16 H 0.053 0.947 17 C 0.091 3.909 18 O -0.585 6.585 19 O -0.390 6.390 20 C 0.072 3.928 21 C 0.021 3.979 22 H 0.061 0.939 23 C -0.134 4.134 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.117 0.883 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 0.911 10.192 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.186 4.186 3 C 0.113 3.887 4 H 0.042 0.958 5 C -0.551 4.551 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.258 5.258 14 C -0.089 4.089 15 C 0.036 3.964 16 H 0.071 0.929 17 C 0.013 3.987 18 O -0.393 6.393 19 O -0.309 6.309 20 C -0.005 4.005 21 C -0.087 4.087 22 H 0.079 0.921 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.973 1.683 9.802 11.601 hybrid contribution 0.958 -1.213 -0.545 1.639 sum -5.015 0.470 9.257 10.539 Atomic orbital electron populations 1.21994 0.96874 1.00575 1.00202 1.22086 0.93973 1.01277 1.01299 1.19203 0.93985 0.89051 0.86431 0.95798 1.21381 0.92623 1.36105 1.05006 0.93256 1.25596 1.01978 0.95296 0.95555 1.69990 1.36249 1.39624 1.09921 0.85701 0.81109 0.78116 0.77199 1.19790 1.21108 1.20194 1.62477 1.20760 1.38451 1.04135 1.22486 1.01333 0.94602 0.90436 1.22193 0.84272 0.96318 0.93610 0.92938 1.22076 1.01019 0.92650 0.82988 1.86473 1.95216 1.40831 1.16785 1.87927 1.29008 1.64974 1.48962 1.22800 1.02201 0.91511 0.83968 1.22741 0.90847 0.98525 0.96587 0.92143 1.21722 1.02100 0.98729 0.96604 0.92793 0.93610 0.93406 0.91512 0.94435 0.93093 0.90987 0.94096 0.90310 0.92173 0.75174 0.86536 0.93276 0.92969 0.93865 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 8.11 71.98 0.58 -4.76 16 2 C -0.15 -6.80 4.71 30.59 0.14 -6.65 16 3 C 0.22 10.72 1.73 44.17 0.08 10.80 16 4 H 0.02 1.29 5.41 -2.38 -0.01 1.28 16 5 C -0.51 -27.86 8.24 25.60 0.21 -27.65 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.53 -22.35 4.39 -849.30 -3.73 -26.08 16 14 C 0.04 1.52 3.66 86.31 0.32 1.84 16 15 C 0.09 3.16 3.09 30.62 0.09 3.26 16 16 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 17 C 0.09 2.38 6.71 71.98 0.48 2.86 16 18 O -0.58 -14.77 13.63 -144.47 -1.97 -16.73 16 19 O -0.39 -13.41 10.44 -144.47 -1.51 -14.92 16 20 C 0.07 2.25 6.29 72.02 0.45 2.70 16 21 C 0.02 0.76 1.98 44.93 0.09 0.85 16 22 H 0.06 2.17 4.01 -2.39 -0.01 2.16 16 23 C -0.13 -4.47 8.69 71.98 0.63 -3.85 16 24 H 0.05 1.92 5.24 -2.39 -0.01 1.91 16 25 H 0.04 1.75 6.91 -2.39 -0.02 1.74 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 3.54 5.96 -2.39 -0.01 3.53 16 28 H 0.04 1.70 6.10 -2.39 -0.01 1.69 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.07 2.91 7.70 -2.39 -0.02 2.89 16 31 H 0.04 1.55 5.13 -2.39 -0.01 1.54 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.40 5.50 9.12 -74.06 -0.68 4.82 16 35 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.62 6.03 -2.38 -0.01 1.61 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -63.12 291.97 -1.04 -64.16 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.37 Total: 18.98 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 3.52 Total: -19.38 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.49 Total: -77.69 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -3.48 Total: -31.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.12 -1.04 -64.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251311165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.843 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds