Wall clock time and date at job start Mon Mar 30 2020 03:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 H 1.09000 * 109.47012 * 174.60236 * 3 2 1 5 5 C 1.50703 * 109.47126 * 54.60582 * 3 2 1 6 6 H 1.07992 * 119.99817 * 240.00303 * 5 3 2 7 7 C 1.37882 * 119.99563 * 59.99523 * 5 3 2 8 8 N 1.31511 * 120.00499 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47093 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47272 * 300.00632 * 9 7 5 12 12 H 1.48504 * 109.46694 * 60.00504 * 9 7 5 13 13 N 1.46897 * 109.47257 * 294.60800 * 3 2 1 14 14 C 1.46908 * 110.99821 * 273.43342 * 13 3 2 15 15 C 1.53004 * 109.47077 * 179.27193 * 14 13 3 16 16 O 1.42905 * 110.43149 * 64.29940 * 15 14 13 17 17 C 1.54802 * 110.48894 * 301.75922 * 15 14 13 18 18 C 1.55228 * 101.98760 * 220.51558 * 17 15 14 19 19 O 1.44386 * 103.56296 * 36.88007 * 18 17 15 20 20 C 1.43748 * 106.97295 * 320.00964 * 19 18 17 21 21 H 1.09008 * 109.99567 * 146.00592 * 20 19 18 22 22 C 1.52991 * 109.88078 * 267.09096 * 20 19 18 23 23 H 1.09004 * 109.46953 * 185.63266 * 1 2 3 24 24 H 1.08990 * 109.47396 * 305.63805 * 1 2 3 25 25 H 1.09006 * 109.47034 * 65.64424 * 1 2 3 26 26 H 1.09001 * 109.47176 * 240.00074 * 2 1 3 27 27 H 1.08996 * 109.47743 * 120.00189 * 2 1 3 28 28 H 0.96999 * 120.00142 * 179.97438 * 8 7 5 29 29 H 1.00899 * 111.00037 * 37.38439 * 13 3 2 30 30 H 1.08995 * 109.47297 * 299.27523 * 14 13 3 31 31 H 1.09004 * 109.46743 * 59.27627 * 14 13 3 32 32 H 0.96703 * 114.00286 * 300.70318 * 16 15 14 33 33 H 1.09004 * 110.90894 * 338.63762 * 17 15 14 34 34 H 1.09003 * 110.91247 * 102.24012 * 17 15 14 35 35 H 1.09004 * 110.52000 * 278.38657 * 18 17 15 36 36 H 1.08996 * 110.77887 * 155.49757 * 18 17 15 37 37 H 1.09004 * 109.46947 * 177.83778 * 22 20 19 38 38 H 1.09006 * 109.47236 * 297.83138 * 22 20 19 39 39 H 1.08992 * 109.47239 * 57.83257 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1256 1.4440 0.0967 5 6 1.4315 2.1904 1.1582 6 1 0.8230 3.0640 0.9770 7 6 1.6516 1.7592 2.4493 8 7 2.3929 0.6955 2.6699 9 14 0.8980 2.6867 3.8851 10 1 1.2829 2.0259 5.1579 11 1 1.3935 4.0865 3.8849 12 1 -0.5812 2.6851 3.7536 13 7 1.6594 2.0964 -1.2592 14 6 2.6600 1.8467 -2.3054 15 6 2.2210 2.5268 -3.6037 16 8 2.1892 3.9458 -3.4376 17 6 0.8341 2.0021 -4.0481 18 6 1.0153 1.8729 -5.5844 19 8 2.3793 1.4215 -5.7276 20 6 3.1630 2.1402 -4.7604 21 1 3.9675 1.5063 -4.3871 22 6 3.7482 3.4015 -5.3986 23 1 -0.3633 -1.0228 0.1009 24 1 -0.3633 0.5987 0.8351 25 1 -0.3633 0.4238 -0.9363 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5480 0.3924 3.5782 29 1 0.7424 1.8000 -1.5578 30 1 3.6226 2.2502 -1.9913 31 1 2.7525 0.7732 -2.4708 32 1 1.5900 4.2469 -2.7409 33 1 0.6230 1.0318 -3.5987 34 1 0.0506 2.7202 -3.8059 35 1 0.8784 2.8401 -6.0680 36 1 0.3228 1.1382 -5.9950 37 1 4.3090 3.9609 -4.6497 38 1 4.4130 3.1205 -6.2154 39 1 2.9396 4.0217 -5.7852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300374826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:51 Heat of formation + Delta-G solvation = -124.464446 kcal Electronic energy + Delta-G solvation = -18888.851773 eV Core-core repulsion = 16023.203191 eV Total energy + Delta-G solvation = -2865.648582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20972 -38.37513 -36.95320 -34.43254 -32.76192 -32.24178 -31.38564 -28.89780 -27.38596 -25.24088 -24.59419 -22.75052 -21.35959 -21.10484 -18.45224 -17.71806 -17.51463 -17.08503 -16.53761 -16.16777 -15.47363 -15.23795 -14.92356 -14.61041 -14.47686 -14.09732 -14.01835 -13.69663 -13.48013 -12.94038 -12.83595 -12.70638 -12.70125 -12.46389 -12.42059 -12.08882 -12.02374 -11.74175 -11.46387 -11.35340 -11.02819 -10.76486 -10.63121 -10.42712 -9.01286 -8.05197 -6.13724 1.45372 1.46333 1.53312 2.45883 2.90114 3.16476 3.24119 3.34548 3.63052 3.82549 4.07963 4.19974 4.26318 4.38407 4.50778 4.54710 4.56670 4.67498 4.69334 4.72870 4.76970 4.90685 4.97967 5.06951 5.08939 5.13330 5.34085 5.38043 5.41104 5.69712 5.73473 5.81169 5.84768 6.29819 6.62244 6.78362 6.87480 6.98027 7.54024 9.00221 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.005856 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.204486 B = 4780.343307 C = 5006.766586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.222 3.778 4 H -0.007 1.007 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.290 1.290 11 H -0.276 1.276 12 H -0.270 1.270 13 N -0.678 5.678 14 C 0.044 3.956 15 C 0.118 3.882 16 O -0.552 6.552 17 C -0.178 4.178 18 C 0.048 3.952 19 O -0.387 6.387 20 C 0.080 3.920 21 H 0.097 0.903 22 C -0.145 4.145 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.258 0.742 29 H 0.335 0.665 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.391 0.609 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 2.284 -13.766 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.216 1.216 11 H -0.202 1.202 12 H -0.195 1.195 13 N -0.309 5.309 14 C -0.086 4.086 15 C 0.076 3.924 16 O -0.360 6.360 17 C -0.216 4.216 18 C -0.028 4.028 19 O -0.307 6.307 20 C 0.022 3.978 21 H 0.114 0.886 22 C -0.202 4.202 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.382 2.624 -14.070 14.509 hybrid contribution -0.620 -0.615 1.624 1.844 sum -3.002 2.009 -12.445 12.959 Atomic orbital electron populations 1.21480 0.95664 0.99684 1.00974 1.21953 0.96720 1.00010 0.99232 1.18934 0.93493 0.89461 0.86742 0.98900 1.21253 1.30376 1.11447 0.90647 0.92437 1.25610 0.95969 0.95866 1.01118 1.70010 1.40061 1.25267 1.20964 0.85706 0.79112 0.78704 0.78651 1.21589 1.20153 1.19470 1.60671 1.04506 1.62698 1.03069 1.22509 0.96746 0.97298 0.92031 1.22333 0.94721 0.82121 0.93184 1.86389 1.69635 1.19542 1.60435 1.23803 0.97650 1.02944 0.97190 1.23690 0.83357 1.00972 0.94731 1.88891 1.20116 1.63990 1.57682 1.22762 0.93293 0.94451 0.87311 0.88558 1.21841 1.01131 0.96460 1.00815 0.94051 0.93393 0.93059 0.95930 0.92122 0.93264 0.84585 0.92461 0.95671 0.75886 0.90484 0.88055 0.91192 0.87140 0.91551 0.91749 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.40 71.98 0.68 -4.13 16 2 C -0.14 -6.36 5.51 30.59 0.17 -6.19 16 3 C 0.22 10.70 2.34 44.17 0.10 10.80 16 4 H -0.01 -0.39 7.79 -2.39 -0.02 -0.41 16 5 C -0.50 -26.18 7.24 25.60 0.19 -25.99 16 6 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.67 5.27 84.66 0.45 1.12 16 8 N -0.92 -52.19 11.38 21.45 0.24 -51.95 16 9 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.68 -26.03 5.85 -495.42 -2.90 -28.93 16 14 C 0.04 1.52 4.42 86.30 0.38 1.90 16 15 C 0.12 3.27 1.14 -9.81 -0.01 3.26 16 16 O -0.55 -15.46 11.22 -148.98 -1.67 -17.14 16 17 C -0.18 -4.18 5.46 31.97 0.17 -4.01 16 18 C 0.05 1.04 7.67 72.75 0.56 1.60 16 19 O -0.39 -10.43 11.19 -148.98 -1.67 -12.10 16 20 C 0.08 2.14 3.76 30.96 0.12 2.26 16 21 H 0.10 2.59 7.69 -2.38 -0.02 2.57 16 22 C -0.15 -3.52 8.56 71.98 0.62 -2.90 16 23 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.05 2.13 6.82 -2.39 -0.02 2.11 16 25 H 0.05 1.75 6.66 -2.38 -0.02 1.74 16 26 H 0.02 0.94 7.45 -2.39 -0.02 0.92 16 27 H 0.06 3.19 6.23 -2.39 -0.01 3.17 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.33 11.79 5.28 -89.69 -0.47 11.32 16 30 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 31 H 0.03 0.89 7.45 -2.38 -0.02 0.87 16 32 H 0.39 10.27 8.73 -74.06 -0.65 9.62 16 33 H 0.08 1.90 7.52 -2.38 -0.02 1.88 16 34 H 0.10 2.12 8.08 -2.39 -0.02 2.10 16 35 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.67 7.85 -2.38 -0.02 1.65 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.45 7.88 -2.39 -0.02 1.43 16 Total: -1.00 -58.21 303.42 -0.64 -58.84 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.08 Total: 28.62 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.41 Total: -22.29 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.65 Total: -80.88 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -3.34 Total: -29.24 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.21 -0.64 -58.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300374826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.621 kcal (2) G-P(sol) polarization free energy of solvation -58.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds