Wall clock time and date at job start Mon Mar 30 2020 04:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52592 * 2 1 4 4 C 1.54279 * 109.52577 * 239.86452 * 2 1 3 5 5 N 1.40443 * 111.68450 * 162.87710 * 4 2 1 6 6 C 1.46905 * 110.99755 * 188.29740 * 5 4 2 7 7 C 1.53006 * 109.47122 * 75.90802 * 6 5 4 8 8 O 1.42898 * 109.47154 * 64.61848 * 7 6 5 9 9 C 1.42900 * 114.00025 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47358 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99392 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00166 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99896 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99751 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47062 * 269.99706 * 14 12 10 16 16 H 1.48498 * 109.47050 * 30.00024 * 14 12 10 17 17 H 1.48501 * 109.47054 * 149.99837 * 14 12 10 18 18 C 1.47629 * 114.31917 * 61.80636 * 5 4 2 19 19 C 1.50894 * 108.77101 * 279.99690 * 18 5 4 20 20 C 1.53625 * 111.71378 * 91.01091 * 19 18 5 21 21 O 1.40618 * 109.53231 * 120.21671 * 2 1 3 22 22 H 1.09002 * 109.46474 * 180.13572 * 1 2 3 23 23 H 1.08999 * 109.46815 * 300.13467 * 1 2 3 24 24 H 1.08997 * 109.47090 * 60.14268 * 1 2 3 25 25 H 1.08990 * 109.04018 * 42.30710 * 4 2 1 26 26 H 1.08996 * 108.97590 * 283.39939 * 4 2 1 27 27 H 1.08992 * 109.47213 * 315.90725 * 6 5 4 28 28 H 1.09005 * 109.46999 * 195.90612 * 6 5 4 29 29 H 1.09005 * 109.46920 * 304.61821 * 7 6 5 30 30 H 1.08997 * 109.46949 * 184.62540 * 7 6 5 31 31 H 1.09005 * 109.46809 * 60.00150 * 9 8 7 32 32 H 1.08996 * 109.47196 * 300.00445 * 9 8 7 33 33 H 0.97001 * 119.99508 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.59163 * 39.78705 * 18 5 4 35 35 H 1.09004 * 109.58616 * 160.21114 * 18 5 4 36 36 H 1.08994 * 109.03101 * 330.43639 * 19 18 5 37 37 H 1.08996 * 108.97209 * 211.53913 * 19 18 5 38 38 H 1.08993 * 108.86614 * 197.84686 * 20 19 18 39 39 H 1.09000 * 108.86843 * 79.42480 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0457 -0.7300 -1.2575 5 7 3.3946 -0.4340 -1.5129 6 6 3.8151 -0.9740 -2.8128 7 6 3.2586 -0.0947 -3.9345 8 8 3.8403 1.2079 -3.8517 9 6 3.3850 2.1129 -4.8595 10 6 4.0590 3.4484 -4.6772 11 1 4.7648 3.5915 -3.8724 12 6 3.7754 4.4871 -5.5384 13 7 4.3640 5.6523 -5.3795 14 14 2.5551 4.2391 -6.9308 15 1 3.2736 3.7617 -8.1395 16 1 1.5415 3.2316 -6.5271 17 1 1.8800 5.5269 -7.2326 18 6 4.3217 -0.8503 -0.4421 19 6 4.2787 0.1758 0.6635 20 6 3.2247 -0.1757 1.7244 21 8 2.0002 -0.6670 1.1452 22 1 -0.3632 -1.0277 0.0024 23 1 -0.3633 0.5159 0.8888 24 1 -0.3633 0.5116 -0.8912 25 1 1.4464 -0.4264 -2.1158 26 1 1.9390 -1.8049 -1.1121 27 1 3.4350 -1.9894 -2.9245 28 1 4.9038 -0.9857 -2.8664 29 1 2.1762 -0.0166 -3.8319 30 1 3.5008 -0.5402 -4.8994 31 1 2.3052 2.2368 -4.7756 32 1 3.6294 1.7135 -5.8438 33 1 4.1647 6.3829 -5.9856 34 1 4.0167 -1.8212 -0.0517 35 1 5.3342 -0.9160 -0.8405 36 1 4.0412 1.1496 0.2355 37 1 5.2583 0.2258 1.1388 38 1 3.0042 0.7160 2.3111 39 1 3.6323 -0.9393 2.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338958336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:29 Heat of formation + Delta-G solvation = -109.637970 kcal Electronic energy + Delta-G solvation = -18430.405179 eV Core-core repulsion = 15565.399522 eV Total energy + Delta-G solvation = -2865.005658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85684 -38.76262 -37.26916 -34.85802 -34.46431 -32.25496 -30.52986 -29.06957 -27.72924 -25.66331 -23.94030 -22.95321 -21.75252 -21.39710 -19.04196 -17.92863 -17.56360 -17.39937 -16.76632 -16.30231 -16.21471 -16.10544 -15.22134 -14.95398 -14.69051 -14.20312 -13.77290 -13.70592 -13.57714 -13.43533 -13.18503 -12.87663 -12.79509 -12.62509 -12.41549 -12.07429 -11.86791 -11.82562 -11.65821 -11.33743 -11.27316 -10.90965 -10.41816 -10.27374 -9.09092 -8.36330 -6.43657 1.32865 1.36217 1.47155 2.29896 2.72431 2.94456 2.96226 3.15007 3.78446 3.86622 4.05066 4.10602 4.20584 4.31196 4.32368 4.41383 4.47702 4.54053 4.56009 4.62040 4.67610 4.71664 4.79850 4.81537 4.91002 5.01411 5.03112 5.04210 5.10763 5.25093 5.32035 5.46074 5.96115 6.16575 6.35284 6.53989 6.60667 6.83100 7.21187 8.81007 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.027772 B = 0.005336 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.977039 B = 5246.099441 C = 5300.942679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.047 0.953 4 C 0.055 3.945 5 N -0.570 5.570 6 C 0.072 3.928 7 C 0.054 3.946 8 O -0.392 6.392 9 C 0.180 3.820 10 C -0.542 4.542 11 H 0.028 0.972 12 C 0.012 3.988 13 N -0.943 5.943 14 Si 0.956 3.044 15 H -0.258 1.258 16 H -0.247 1.247 17 H -0.273 1.273 18 C 0.071 3.929 19 C -0.154 4.154 20 C 0.064 3.936 21 O -0.398 6.398 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.009 0.991 33 H 0.272 0.728 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -16.633 9.713 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.066 0.934 4 C -0.075 4.075 5 N -0.295 5.295 6 C -0.055 4.055 7 C -0.024 4.024 8 O -0.311 6.311 9 C 0.104 3.896 10 C -0.580 4.580 11 H 0.046 0.954 12 C -0.185 4.185 13 N -0.583 5.583 14 Si 0.777 3.223 15 H -0.183 1.183 16 H -0.171 1.171 17 H -0.198 1.198 18 C -0.055 4.055 19 C -0.193 4.193 20 C -0.012 4.012 21 O -0.318 6.318 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.034 -16.084 9.861 19.808 hybrid contribution -0.157 -0.027 -0.803 0.819 sum -6.191 -16.111 9.058 19.492 Atomic orbital electron populations 1.21814 0.92025 1.03202 1.02928 1.21976 0.95267 0.95104 0.84422 0.93446 1.21594 0.89312 0.97940 0.98644 1.58890 1.03116 1.64359 1.03085 1.22092 1.01075 0.95205 0.87175 1.22717 0.96967 0.84470 0.98214 1.87952 1.67681 1.21876 1.53616 1.20269 0.93764 0.88126 0.87457 1.21159 1.26022 0.95900 1.14893 0.95393 1.25844 0.98159 0.94003 1.00533 1.70040 1.44784 1.03646 1.39815 0.85603 0.79228 0.78820 0.78648 1.18278 1.17059 1.19823 1.21765 0.96031 0.96703 0.91028 1.22025 1.00820 0.99777 0.96637 1.23057 0.83533 1.00212 0.94416 1.87416 1.40890 1.59474 1.44007 0.91188 0.91507 0.90717 0.90721 0.95119 0.90885 0.90261 0.93852 0.92412 0.97596 0.97334 0.91851 0.93240 0.90313 0.92916 0.88478 0.92876 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.49 71.98 0.68 -2.34 16 2 C 0.09 2.39 2.84 31.03 0.09 2.48 16 3 H 0.05 1.46 7.11 -2.39 -0.02 1.44 16 4 C 0.05 1.47 4.35 87.91 0.38 1.85 16 5 N -0.57 -16.86 3.96 -911.88 -3.61 -20.47 16 6 C 0.07 2.00 5.42 86.30 0.47 2.47 16 7 C 0.05 1.83 6.11 71.98 0.44 2.27 16 8 O -0.39 -18.63 10.27 -148.98 -1.53 -20.16 16 9 C 0.18 9.22 4.76 71.24 0.34 9.56 16 10 C -0.54 -33.71 9.99 25.60 0.26 -33.46 16 11 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 12 C 0.01 0.74 5.47 84.65 0.46 1.20 16 13 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 14 Si 0.96 43.89 27.47 68.60 1.88 45.78 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.07 1.76 5.33 85.48 0.46 2.22 16 19 C -0.15 -3.68 5.41 30.12 0.16 -3.52 16 20 C 0.06 1.35 6.72 72.19 0.49 1.84 16 21 O -0.40 -10.15 9.75 -145.50 -1.42 -11.57 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.04 6.29 -2.39 -0.02 2.03 16 26 H 0.03 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.07 1.61 7.98 -2.39 -0.02 1.59 16 28 H 0.08 2.22 7.45 -2.38 -0.02 2.20 16 29 H 0.04 1.41 6.62 -2.38 -0.02 1.40 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.01 0.31 7.20 -2.38 -0.02 0.30 16 32 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.05 1.12 7.64 -2.39 -0.02 1.11 16 35 H 0.08 1.87 7.43 -2.39 -0.02 1.85 16 36 H 0.05 1.61 7.39 -2.39 -0.02 1.60 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.87 306.17 0.79 -71.08 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.94 Total: 10.61 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.22 Total: -15.44 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.31 Total: -80.30 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -2.95 Total: -31.73 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Total: -71.87 0.79 -71.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338958336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.562 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds