Wall clock time and date at job start Mon Mar 30 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 H 1.09001 * 110.28562 * 307.12569 * 3 2 1 5 5 C 1.54373 * 110.32451 * 69.35942 * 3 2 1 6 6 N 1.48564 * 104.59797 * 142.74950 * 5 3 2 7 7 C 1.46894 * 110.99988 * 200.96225 * 6 5 3 8 8 C 1.53009 * 109.46764 * 185.29408 * 7 6 5 9 9 O 1.42899 * 109.47113 * 64.99856 * 8 7 6 10 10 C 1.42903 * 113.99629 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46878 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.48566 * 104.21855 * 320.52024 * 6 5 3 20 20 C 1.54259 * 110.32483 * 184.99807 * 3 2 1 21 21 H 1.09003 * 110.32066 * 122.20693 * 20 3 2 22 22 O 1.42903 * 110.40937 * 0.04268 * 20 3 2 23 23 H 1.09006 * 109.47050 * 60.00309 * 1 2 3 24 24 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47461 * 300.00291 * 1 2 3 26 26 H 1.09008 * 109.47237 * 239.99354 * 2 1 3 27 27 H 1.09003 * 109.46700 * 120.00365 * 2 1 3 28 28 H 1.09010 * 110.41126 * 23.97283 * 5 3 2 29 29 H 1.09002 * 110.41680 * 261.53232 * 5 3 2 30 30 H 1.09000 * 109.47283 * 65.29357 * 7 6 5 31 31 H 1.09002 * 109.47562 * 305.28677 * 7 6 5 32 32 H 1.09007 * 109.46516 * 304.99789 * 8 7 6 33 33 H 1.09004 * 109.47113 * 185.00258 * 8 7 6 34 34 H 1.09002 * 109.47382 * 59.99956 * 10 9 8 35 35 H 1.09001 * 109.46938 * 299.99942 * 10 9 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.40822 * 158.25827 * 19 6 5 38 38 H 1.09004 * 110.41027 * 280.69975 * 19 6 5 39 39 H 0.96700 * 113.99352 * 182.85822 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5842 2.0045 -0.8152 5 6 1.7377 2.1181 1.3547 6 7 2.9220 2.9755 1.6181 7 6 3.0340 3.2937 3.0477 8 6 4.1828 4.2815 3.2618 9 8 3.8711 5.5206 2.6219 10 6 4.8850 6.5180 2.7616 11 6 4.4536 7.7755 2.0519 12 1 3.5004 7.8097 1.5453 13 6 5.2754 8.8826 2.0503 14 7 6.4358 8.8410 2.6676 15 14 4.7404 10.4415 1.1712 16 1 3.4033 10.2313 0.5602 17 1 4.6685 11.5596 2.1459 18 1 5.7238 10.7732 0.1091 19 6 4.0745 2.1557 1.1632 20 6 3.5773 1.4672 -0.1260 21 1 3.8760 2.0429 -1.0021 22 8 4.0920 0.1366 -0.2083 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5140 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6299 1.3678 2.1381 29 1 0.8362 2.7266 1.2833 30 1 3.2309 2.3803 3.6090 31 1 2.1020 3.7398 3.3949 32 1 5.0983 3.8720 2.8346 33 1 4.3236 4.4492 4.3296 34 1 5.8148 6.1548 2.3237 35 1 5.0406 6.7322 3.8189 36 1 7.0142 9.6198 2.6662 37 1 4.9323 2.7925 0.9474 38 1 4.3323 1.4113 1.9165 39 1 5.0572 0.0900 -0.2450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339057378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:38 Heat of formation + Delta-G solvation = -128.511749 kcal Electronic energy + Delta-G solvation = -17957.725697 eV Core-core repulsion = 15091.901610 eV Total energy + Delta-G solvation = -2865.824086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67493 -38.58174 -36.81141 -35.29076 -34.78193 -31.81854 -29.61018 -28.90999 -28.06058 -24.58740 -24.26106 -23.29551 -21.84325 -20.71479 -18.61459 -18.25129 -17.56090 -17.33088 -16.48688 -16.26298 -15.77122 -15.71422 -15.29650 -14.93123 -14.54782 -14.13234 -14.09523 -13.54811 -13.38818 -13.18739 -13.00034 -12.81584 -12.71375 -12.66373 -12.34053 -12.20583 -11.78117 -11.75270 -11.46397 -11.34590 -11.23892 -10.86555 -10.85172 -10.20014 -9.40200 -8.32089 -6.44026 1.39996 1.41531 1.56637 2.35445 2.84153 3.01647 3.19954 3.45783 3.55849 3.69106 3.92584 4.17423 4.19605 4.25035 4.35334 4.43926 4.51085 4.57188 4.59669 4.62716 4.71211 4.80084 4.88487 4.93675 4.95077 5.05544 5.12040 5.18022 5.25512 5.38448 5.52749 5.55820 5.87655 5.96710 6.02912 6.56354 6.84701 6.85607 7.28338 8.80638 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.004324 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.674739 B = 6474.140440 C = 6592.210489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.085 4.085 4 H 0.085 0.915 5 C 0.041 3.959 6 N -0.522 5.522 7 C 0.059 3.941 8 C 0.060 3.940 9 O -0.396 6.396 10 C 0.209 3.791 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.984 3.016 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.003 3.997 20 C 0.108 3.892 21 H 0.065 0.935 22 O -0.565 6.565 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.048 0.952 34 H -0.018 1.018 35 H -0.016 1.016 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -18.128 -3.918 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 C -0.104 4.104 4 H 0.104 0.896 5 C -0.086 4.086 6 N -0.248 5.248 7 C -0.069 4.069 8 C -0.018 4.018 9 O -0.315 6.315 10 C 0.134 3.866 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.806 3.194 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.126 4.126 20 C 0.048 3.952 21 H 0.083 0.917 22 O -0.372 6.372 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.000 1.000 35 H 0.002 0.998 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.306 -17.636 -4.226 19.947 hybrid contribution 1.230 0.346 0.538 1.386 sum -7.076 -17.290 -3.688 19.042 Atomic orbital electron populations 1.21834 0.95142 1.02054 1.02006 1.21167 0.95509 0.93983 1.02266 1.22024 0.93126 0.97699 0.97586 0.89620 1.23235 0.94125 0.94750 0.96533 1.65291 1.03057 1.38997 1.17413 1.22228 0.98933 0.96981 0.88737 1.22534 0.97511 0.85756 0.95961 1.87903 1.44916 1.22381 1.76322 1.19801 0.86296 0.86434 0.94097 1.21411 1.04995 0.97282 1.34624 0.92202 1.25963 0.94523 1.02621 0.96101 1.70077 1.11165 1.31900 1.43975 0.85130 0.78666 0.77358 0.78210 1.18909 1.19539 1.19589 1.23856 0.95002 0.95735 0.97975 1.22405 0.94443 0.82834 0.95522 0.91744 1.86493 1.27636 1.26233 1.96869 0.92530 0.91993 0.92676 0.91692 0.92524 0.92762 0.89998 0.91082 0.90024 0.94617 0.93411 1.00034 0.99810 0.92052 0.91499 0.92267 0.75831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.78 71.98 0.70 -1.70 16 2 C -0.09 -1.72 4.38 30.59 0.13 -1.58 16 3 C -0.09 -1.87 3.06 -9.90 -0.03 -1.90 16 4 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 5 C 0.04 0.98 5.30 86.45 0.46 1.44 16 6 N -0.52 -15.92 5.32 -881.46 -4.69 -20.61 16 7 C 0.06 1.80 5.19 86.31 0.45 2.24 16 8 C 0.06 2.30 6.08 71.99 0.44 2.73 16 9 O -0.40 -20.18 10.27 -148.98 -1.53 -21.71 16 10 C 0.21 12.14 5.69 71.24 0.41 12.55 16 11 C -0.55 -33.47 9.43 25.60 0.24 -33.23 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.01 0.36 5.46 84.66 0.46 0.82 16 14 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 15 Si 0.98 45.18 29.54 68.60 2.03 47.20 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 C 0.00 0.07 5.47 86.45 0.47 0.55 16 20 C 0.11 2.45 4.39 31.49 0.14 2.59 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 O -0.57 -10.92 11.55 -148.98 -1.72 -12.64 16 23 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.86 7.58 -2.39 -0.02 0.84 16 26 H 0.06 1.27 7.69 -2.38 -0.02 1.25 16 27 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 28 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.73 7.88 -2.39 -0.02 1.71 16 31 H 0.08 2.48 8.13 -2.39 -0.02 2.46 16 32 H 0.04 1.35 7.05 -2.38 -0.02 1.33 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 1.99 7.64 -2.39 -0.02 1.98 16 38 H 0.06 1.42 7.76 -2.39 -0.02 1.40 16 39 H 0.39 4.69 9.11 -74.06 -0.67 4.02 16 Total: -1.00 -69.88 315.14 -1.42 -71.31 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.33 Total: 8.51 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.87 Total: -15.49 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -4.40 Total: -77.18 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -3.25 Total: -34.35 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.88 -1.42 -71.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339057378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.205 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds