Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48445 * 2 1 4 4 C 1.53086 * 109.48363 * 239.97373 * 2 1 3 5 5 C 1.53183 * 109.16668 * 182.40983 * 4 2 1 6 6 H 1.09007 * 109.54081 * 297.11291 * 5 4 2 7 7 N 1.46902 * 109.54209 * 176.84979 * 5 4 2 8 8 C 1.46899 * 110.99421 * 155.00191 * 7 5 4 9 9 C 1.53007 * 109.46600 * 179.97438 * 8 7 5 10 10 O 1.42891 * 109.47443 * 65.00123 * 9 8 7 11 11 C 1.42896 * 114.00282 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47571 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00397 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99900 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47107 * 89.99994 * 16 14 12 18 18 H 1.48493 * 109.47563 * 210.00026 * 16 14 12 19 19 H 1.48503 * 109.47460 * 330.00441 * 16 14 12 20 20 C 1.53171 * 109.03558 * 56.97951 * 5 4 2 21 21 C 1.53093 * 109.16397 * 303.02010 * 20 5 4 22 22 O 1.42904 * 109.47985 * 120.03031 * 2 1 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.02618 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.02599 * 1 2 3 26 26 H 1.09001 * 109.52304 * 302.31900 * 4 2 1 27 27 H 1.09000 * 109.52267 * 62.44174 * 4 2 1 28 28 H 1.00890 * 111.00301 * 31.04868 * 7 5 4 29 29 H 1.09007 * 109.47111 * 299.99180 * 8 7 5 30 30 H 1.08998 * 109.47709 * 59.99742 * 8 7 5 31 31 H 1.09006 * 109.46626 * 184.99611 * 9 8 7 32 32 H 1.08994 * 109.46910 * 304.99275 * 9 8 7 33 33 H 1.09005 * 109.47015 * 299.99339 * 11 10 9 34 34 H 1.08998 * 109.47480 * 59.99238 * 11 10 9 35 35 H 0.97003 * 119.99549 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.52187 * 62.92694 * 20 5 4 37 37 H 1.08998 * 109.52259 * 183.11588 * 20 5 4 38 38 H 1.09001 * 109.48047 * 177.58664 * 21 20 5 39 39 H 1.08996 * 109.48304 * 297.61567 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2121 6 1 3.9690 0.2437 -1.2407 7 7 4.0672 -1.5279 -2.3692 8 6 5.4370 -1.1245 -2.7141 9 6 5.9181 -1.9333 -3.9205 10 8 5.1271 -1.6008 -5.0631 11 6 5.4960 -2.3052 -6.2504 12 6 4.6010 -1.8795 -7.3857 13 1 3.8275 -1.1448 -7.2173 14 6 4.7695 -2.4280 -8.6394 15 7 3.9888 -2.0561 -9.6302 16 14 6.1077 -3.6983 -8.9309 17 1 5.5631 -5.0571 -8.6818 18 1 6.5817 -3.6047 -10.3351 19 1 7.2423 -3.4429 -8.0075 20 6 4.0176 -1.4601 0.0809 21 6 3.4307 -0.7093 1.2791 22 8 2.0065 -0.6742 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3634 0.5143 0.8898 26 1 1.6443 -1.7374 -1.2710 27 1 1.7140 -0.1848 -2.1398 28 1 3.4498 -1.4247 -3.1604 29 1 5.4522 -0.0624 -2.9588 30 1 6.0954 -1.3115 -1.8658 31 1 6.9635 -1.6986 -4.1216 32 1 5.8192 -2.9976 -3.7073 33 1 6.5326 -2.0787 -6.5001 34 1 5.3879 -3.3772 -6.0853 35 1 4.1076 -2.4418 -10.5123 36 1 3.6613 -2.4902 0.0863 37 1 5.1059 -1.4498 0.1421 38 1 3.7099 -1.2204 2.2005 39 1 3.8194 0.3088 1.2960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385353625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -107.425678 kcal Electronic energy + Delta-G solvation = -17707.804942 eV Core-core repulsion = 14842.895216 eV Total energy + Delta-G solvation = -2864.909726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72391 -37.36033 -35.77881 -32.98461 -32.73994 -31.81874 -28.89096 -27.78016 -26.55238 -23.80951 -22.26725 -21.86934 -21.15927 -20.25081 -16.89195 -16.49914 -16.20198 -15.88414 -15.49067 -15.20903 -14.97547 -14.52873 -14.30944 -13.54201 -13.45915 -12.96221 -12.66814 -12.53636 -12.34920 -12.18803 -11.97446 -11.74677 -11.33735 -11.20726 -11.02906 -10.79111 -10.74124 -10.60412 -10.30465 -9.88174 -9.66129 -9.21073 -8.87472 -8.49370 -8.30717 -6.13703 -4.12905 3.24001 3.30890 3.32321 3.60343 4.13104 4.34064 4.54708 4.65658 4.78320 4.79085 4.99584 5.07579 5.18026 5.20912 5.26406 5.32900 5.42518 5.51183 5.51467 5.62779 5.68687 5.74629 5.85896 5.89988 6.00352 6.03690 6.08265 6.14716 6.26712 6.59597 6.98270 7.08510 7.16545 7.55663 7.60086 7.98622 8.63860 8.96511 9.45658 10.99313 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037743 B = 0.004039 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.688316 B = 6930.012842 C = 7483.411586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.153 4.153 5 C 0.085 3.915 6 H 0.041 0.959 7 N -0.683 5.683 8 C 0.066 3.934 9 C 0.058 3.942 10 O -0.385 6.385 11 C 0.171 3.829 12 C -0.520 4.520 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.144 4.144 21 C 0.063 3.937 22 O -0.382 6.382 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.358 0.642 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 3.005 20.646 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.073 0.927 4 C -0.191 4.191 5 C -0.025 4.025 6 H 0.059 0.941 7 N -0.316 5.316 8 C -0.063 4.063 9 C -0.020 4.020 10 O -0.304 6.304 11 C 0.096 3.904 12 C -0.558 4.558 13 H 0.099 0.901 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.182 4.182 21 C -0.014 4.014 22 O -0.301 6.301 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.178 0.822 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.833 2.491 20.927 21.091 hybrid contribution 1.075 0.069 -0.992 1.464 sum 0.242 2.559 19.936 20.101 Atomic orbital electron populations 1.21768 0.92960 1.03106 1.02372 1.22057 0.95138 0.94761 0.84885 0.92653 1.22438 0.95301 1.02868 0.98520 1.21516 0.94122 0.95003 0.91832 0.94059 1.60498 1.03884 1.57965 1.09237 1.21979 0.90646 0.97500 0.96195 1.22379 0.94228 0.98434 0.86968 1.87836 1.57902 1.66697 1.17960 1.20578 0.95610 0.91143 0.83088 1.20884 1.17596 1.25638 0.91652 0.90056 1.24762 0.96067 0.96518 0.95586 1.69875 1.38531 1.43460 1.01523 0.86840 0.82671 0.82278 0.77893 1.19867 1.20783 1.19133 1.22226 1.00901 1.01235 0.93848 1.22570 0.81009 0.99375 0.98488 1.87913 1.21043 1.78070 1.43084 0.91652 0.90937 0.91977 0.89934 0.90641 0.82152 0.94649 0.90673 0.94011 0.93376 0.98045 0.98267 0.92346 0.90232 0.91204 0.88880 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.56 37.16 0.36 -0.93 16 2 C 0.09 0.93 3.26 -26.69 -0.09 0.84 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -1.74 4.69 -26.59 -0.12 -1.86 16 5 C 0.09 1.03 2.58 -67.53 -0.17 0.85 16 6 H 0.04 0.50 7.80 -51.92 -0.41 0.09 16 7 N -0.68 -9.93 6.31 -106.52 -0.67 -10.61 16 8 C 0.07 0.96 5.91 -3.82 -0.02 0.94 16 9 C 0.06 1.02 6.28 37.16 0.23 1.25 16 10 O -0.38 -8.84 9.85 -35.23 -0.35 -9.18 16 11 C 0.17 4.36 4.76 36.01 0.17 4.53 16 12 C -0.52 -15.45 9.99 -34.44 -0.34 -15.79 16 13 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 16 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.14 -1.54 5.63 -26.60 -0.15 -1.69 16 21 C 0.06 0.60 6.84 37.21 0.25 0.86 16 22 O -0.38 -4.40 10.41 -35.23 -0.37 -4.77 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.36 5.85 7.92 -39.30 -0.31 5.53 16 29 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.07 0.92 7.54 -51.93 -0.39 0.53 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 34 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 35 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.69 7.57 -51.93 -0.39 0.30 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -31.43 313.31 -7.47 -38.90 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.93 Total: -0.03 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.02 Total: -8.97 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.10 Total: -37.45 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.71 Total: -13.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.43 -7.47 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385353625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.525 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds