Wall clock time and date at job start Mon Mar 30 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48445 * 2 1 4 4 C 1.53086 * 109.48363 * 239.97373 * 2 1 3 5 5 C 1.53183 * 109.16668 * 182.40983 * 4 2 1 6 6 H 1.09007 * 109.54081 * 297.11291 * 5 4 2 7 7 N 1.46902 * 109.54209 * 176.84979 * 5 4 2 8 8 C 1.46899 * 110.99421 * 155.00191 * 7 5 4 9 9 C 1.53007 * 109.46600 * 179.97438 * 8 7 5 10 10 O 1.42891 * 109.47443 * 65.00123 * 9 8 7 11 11 C 1.42896 * 114.00282 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47571 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00397 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99900 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47107 * 89.99994 * 16 14 12 18 18 H 1.48493 * 109.47563 * 210.00026 * 16 14 12 19 19 H 1.48503 * 109.47460 * 330.00441 * 16 14 12 20 20 C 1.53171 * 109.03558 * 56.97951 * 5 4 2 21 21 C 1.53093 * 109.16397 * 303.02010 * 20 5 4 22 22 O 1.42904 * 109.47985 * 120.03031 * 2 1 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.02618 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.02599 * 1 2 3 26 26 H 1.09001 * 109.52304 * 302.31900 * 4 2 1 27 27 H 1.09000 * 109.52267 * 62.44174 * 4 2 1 28 28 H 1.00890 * 111.00301 * 31.04868 * 7 5 4 29 29 H 1.09007 * 109.47111 * 299.99180 * 8 7 5 30 30 H 1.08998 * 109.47709 * 59.99742 * 8 7 5 31 31 H 1.09006 * 109.46626 * 184.99611 * 9 8 7 32 32 H 1.08994 * 109.46910 * 304.99275 * 9 8 7 33 33 H 1.09005 * 109.47015 * 299.99339 * 11 10 9 34 34 H 1.08998 * 109.47480 * 59.99238 * 11 10 9 35 35 H 0.97003 * 119.99549 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.52187 * 62.92694 * 20 5 4 37 37 H 1.08998 * 109.52259 * 183.11588 * 20 5 4 38 38 H 1.09001 * 109.48047 * 177.58664 * 21 20 5 39 39 H 1.08996 * 109.48304 * 297.61567 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2121 6 1 3.9690 0.2437 -1.2407 7 7 4.0672 -1.5279 -2.3692 8 6 5.4370 -1.1245 -2.7141 9 6 5.9181 -1.9333 -3.9205 10 8 5.1271 -1.6008 -5.0631 11 6 5.4960 -2.3052 -6.2504 12 6 4.6010 -1.8795 -7.3857 13 1 3.8275 -1.1448 -7.2173 14 6 4.7695 -2.4280 -8.6394 15 7 3.9888 -2.0561 -9.6302 16 14 6.1077 -3.6983 -8.9309 17 1 5.5631 -5.0571 -8.6818 18 1 6.5817 -3.6047 -10.3351 19 1 7.2423 -3.4429 -8.0075 20 6 4.0176 -1.4601 0.0809 21 6 3.4307 -0.7093 1.2791 22 8 2.0065 -0.6742 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3634 0.5143 0.8898 26 1 1.6443 -1.7374 -1.2710 27 1 1.7140 -0.1848 -2.1398 28 1 3.4498 -1.4247 -3.1604 29 1 5.4522 -0.0624 -2.9588 30 1 6.0954 -1.3115 -1.8658 31 1 6.9635 -1.6986 -4.1216 32 1 5.8192 -2.9976 -3.7073 33 1 6.5326 -2.0787 -6.5001 34 1 5.3879 -3.3772 -6.0853 35 1 4.1076 -2.4418 -10.5123 36 1 3.6613 -2.4902 0.0863 37 1 5.1059 -1.4498 0.1421 38 1 3.7099 -1.2204 2.2005 39 1 3.8194 0.3088 1.2960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385353625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:29 Heat of formation + Delta-G solvation = -130.519245 kcal Electronic energy + Delta-G solvation = -17708.806354 eV Core-core repulsion = 14842.895216 eV Total energy + Delta-G solvation = -2865.911138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59946 -38.90987 -36.99607 -34.89788 -33.77165 -32.99663 -30.46772 -29.16950 -27.73723 -24.65609 -24.02424 -23.29046 -22.24070 -21.15269 -19.07006 -17.62332 -17.30629 -17.05226 -16.75460 -16.47325 -16.36826 -15.92835 -15.53124 -14.93981 -14.65730 -14.48230 -13.98375 -13.57878 -13.46889 -13.32793 -13.18591 -12.91808 -12.78635 -12.57479 -12.27127 -12.14059 -12.01485 -11.83958 -11.59422 -11.39352 -11.20460 -10.93956 -10.52361 -10.36653 -9.42745 -8.38751 -6.46747 1.32994 1.35686 1.46449 2.28380 2.82848 2.94167 3.04335 3.11524 3.67073 3.88624 3.95375 4.17099 4.18024 4.23062 4.28646 4.40796 4.46316 4.52909 4.54653 4.60957 4.70850 4.77956 4.80866 4.83752 4.88531 4.96657 5.01512 5.06262 5.15656 5.28487 5.33857 5.42204 5.91291 6.09516 6.28944 6.34076 6.57003 6.72067 7.17909 8.78303 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037743 B = 0.004039 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.688316 B = 6930.012842 C = 7483.411586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.064 0.936 4 C -0.150 4.150 5 C 0.083 3.917 6 H 0.045 0.955 7 N -0.692 5.692 8 C 0.072 3.928 9 C 0.050 3.950 10 O -0.407 6.407 11 C 0.181 3.819 12 C -0.546 4.546 13 H 0.031 0.969 14 C 0.014 3.986 15 N -0.942 5.942 16 Si 0.955 3.045 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.246 1.246 20 C -0.138 4.138 21 C 0.061 3.939 22 O -0.398 6.398 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.343 0.657 29 H 0.030 0.970 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.273 0.727 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 2.241 22.073 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.082 0.918 4 C -0.189 4.189 5 C -0.026 4.026 6 H 0.063 0.937 7 N -0.323 5.323 8 C -0.057 4.057 9 C -0.027 4.027 10 O -0.327 6.327 11 C 0.106 3.894 12 C -0.584 4.584 13 H 0.049 0.951 14 C -0.184 4.184 15 N -0.581 5.581 16 Si 0.776 3.224 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.169 1.169 20 C -0.176 4.176 21 C -0.016 4.016 22 O -0.318 6.318 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.048 0.952 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.008 1.738 22.394 22.484 hybrid contribution 0.429 0.384 -1.390 1.504 sum 1.437 2.122 21.004 21.160 Atomic orbital electron populations 1.21781 0.92084 1.02974 1.03253 1.22120 0.95930 0.94817 0.83976 0.91771 1.22406 0.95081 1.02200 0.99167 1.21617 0.94410 0.95074 0.91510 0.93675 1.60580 1.03759 1.58749 1.09259 1.21996 0.91164 0.96615 0.95905 1.22704 0.94659 0.99335 0.85954 1.87802 1.59447 1.66765 1.18680 1.20288 0.94707 0.91536 0.82890 1.21163 1.17737 1.25312 0.94169 0.95091 1.25824 0.98891 0.98893 0.94805 1.70028 1.40664 1.45081 1.02340 0.85611 0.79316 0.78906 0.78529 1.18482 1.19789 1.16915 1.22179 1.01623 1.00336 0.93463 1.22714 0.80064 1.00176 0.98609 1.87901 1.22221 1.78312 1.43325 0.92295 0.90029 0.91135 0.91309 0.91030 0.83841 0.95155 0.87597 0.92306 0.92973 0.97045 0.97290 0.91776 0.91672 0.90008 0.87127 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.56 71.98 0.69 -1.75 16 2 C 0.09 1.76 3.26 30.62 0.10 1.86 16 3 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.15 -3.40 4.69 30.68 0.14 -3.25 16 5 C 0.08 1.93 2.58 45.03 0.12 2.04 16 6 H 0.05 1.02 7.80 -2.38 -0.02 1.00 16 7 N -0.69 -19.70 6.31 -490.93 -3.10 -22.80 16 8 C 0.07 1.98 5.91 86.31 0.51 2.49 16 9 C 0.05 1.69 6.28 71.98 0.45 2.14 16 10 O -0.41 -18.67 9.85 -148.98 -1.47 -20.14 16 11 C 0.18 9.12 4.76 71.24 0.34 9.46 16 12 C -0.55 -33.31 9.99 25.60 0.26 -33.05 16 13 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 14 C 0.01 0.83 5.47 84.65 0.46 1.29 16 15 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 16 Si 0.96 43.42 27.47 68.60 1.88 45.30 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.25 -10.28 6.54 99.48 0.65 -9.63 16 20 C -0.14 -2.70 5.63 30.68 0.17 -2.53 16 21 C 0.06 1.04 6.84 72.01 0.49 1.53 16 22 O -0.40 -8.61 10.41 -148.98 -1.55 -10.16 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.34 11.43 7.92 -89.70 -0.71 10.72 16 29 H 0.03 0.86 8.06 -2.38 -0.02 0.84 16 30 H 0.11 2.26 7.54 -2.39 -0.02 2.24 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 34 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.40 7.57 -2.39 -0.02 1.38 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.79 313.31 0.04 -68.76 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.24 Total: 17.81 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.73 Total: -19.76 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.80 Total: -81.81 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -3.02 Total: -30.30 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -68.79 0.04 -68.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385353625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.763 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds