Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 H 1.08998 * 109.47231 * 180.45509 * 3 2 1 5 5 C 1.50701 * 109.46934 * 300.45323 * 3 2 1 6 6 H 1.07993 * 120.00018 * 120.00045 * 5 3 2 7 7 C 1.37881 * 119.99861 * 299.99445 * 5 3 2 8 8 N 1.31514 * 120.00053 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99819 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46987 * 89.99825 * 9 7 5 11 11 H 1.48506 * 109.46699 * 209.99554 * 9 7 5 12 12 H 1.48498 * 109.47188 * 329.99331 * 9 7 5 13 13 N 1.46897 * 109.47106 * 60.45259 * 3 2 1 14 14 C 1.47839 * 111.00419 * 61.48016 * 13 3 2 15 15 C 1.54905 * 104.79972 * 146.36497 * 14 13 3 16 16 C 1.55138 * 101.65033 * 322.93063 * 15 14 13 17 17 C 1.53000 * 110.70536 * 154.03872 * 16 15 14 18 18 O 1.42904 * 109.47363 * 63.11927 * 17 16 15 19 19 O 1.42899 * 110.85349 * 277.19888 * 16 15 14 20 20 C 1.42901 * 113.99680 * 182.45466 * 19 16 15 21 21 C 1.47445 * 111.00416 * 182.32447 * 13 3 2 22 22 H 1.08996 * 109.46498 * 185.15798 * 1 2 3 23 23 H 1.08992 * 109.47240 * 305.15662 * 1 2 3 24 24 H 1.09001 * 109.46863 * 65.15736 * 1 2 3 25 25 H 1.09001 * 109.47558 * 239.99860 * 2 1 3 26 26 H 1.09006 * 109.47426 * 119.99704 * 2 1 3 27 27 H 0.96999 * 120.00275 * 180.02562 * 8 7 5 28 28 H 1.09011 * 110.37238 * 265.19696 * 14 13 3 29 29 H 1.08999 * 110.37387 * 27.41996 * 14 13 3 30 30 H 1.08996 * 110.98819 * 204.83959 * 15 14 13 31 31 H 1.08999 * 110.99063 * 81.02118 * 15 14 13 32 32 H 1.09005 * 109.46696 * 303.12042 * 17 16 15 33 33 H 1.08994 * 109.47581 * 183.12408 * 17 16 15 34 34 H 0.96697 * 113.99634 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.47325 * 185.95950 * 20 19 16 36 36 H 1.08999 * 109.47342 * 305.96145 * 20 19 16 37 37 H 1.09001 * 109.47230 * 65.96148 * 20 19 16 38 38 H 1.08998 * 109.88982 * 117.32831 * 21 13 3 39 39 H 1.09009 * 109.88303 * 356.14528 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 -0.0082 5 6 1.5286 2.1561 -1.2248 6 1 0.9085 3.0339 -1.1188 7 6 1.8524 1.6883 -2.4808 8 7 1.4065 2.3114 -3.5497 9 14 2.9245 0.1697 -2.6641 10 1 2.0652 -1.0407 -2.7065 11 1 3.7073 0.2654 -3.9224 12 1 3.8534 0.0772 -1.5091 13 7 1.5594 2.1318 1.2048 14 6 2.0714 1.4791 2.4286 15 6 2.2724 2.6357 3.4393 16 6 2.7787 3.7746 2.5155 17 6 2.4484 5.1435 3.1137 18 8 3.1365 5.2989 4.3565 19 8 4.1831 3.6532 2.2813 20 6 4.7317 4.7025 1.4812 21 6 1.9861 3.5431 1.2120 22 1 -0.3632 -1.0235 0.0924 23 1 -0.3633 0.5917 0.8401 24 1 -0.3633 0.4318 -0.9326 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6340 1.9821 -4.4333 28 1 1.3427 0.7638 2.8104 29 1 3.0196 0.9817 2.2250 30 1 3.0228 2.3757 4.1858 31 1 1.3297 2.9078 3.9139 32 1 1.3739 5.2168 3.2817 33 1 2.7626 5.9268 2.4241 34 1 2.9729 6.1459 4.7934 35 1 5.7766 4.4832 1.2610 36 1 4.1722 4.7789 0.5489 37 1 4.6649 5.6457 2.0234 38 1 1.1126 4.1947 1.1883 39 1 2.6233 3.7422 0.3502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401975716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = -78.512807 kcal Electronic energy + Delta-G solvation = -19360.245904 eV Core-core repulsion = 16496.589934 eV Total energy + Delta-G solvation = -2863.655970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69374 -36.99184 -35.94821 -33.95865 -31.75663 -29.92974 -29.03744 -26.69516 -26.26005 -24.77580 -22.76627 -21.42605 -19.74253 -19.13954 -17.30052 -16.44275 -16.32985 -15.67729 -15.23913 -14.73942 -14.36507 -14.09409 -13.50576 -13.25567 -13.03410 -12.66710 -12.39403 -12.33340 -12.15069 -11.64633 -11.38430 -11.21047 -10.98663 -10.81003 -10.54631 -10.44819 -10.23989 -10.07981 -9.91032 -9.89161 -9.33794 -9.19033 -8.95690 -8.53479 -7.33517 -6.07298 -4.04186 3.27904 3.38379 3.39773 3.87988 4.29373 4.40814 4.80689 4.89089 5.04973 5.23911 5.33892 5.42447 5.48663 5.60477 5.67283 5.75593 5.91824 6.02851 6.11360 6.15193 6.19594 6.28010 6.37037 6.42420 6.49996 6.60187 6.73663 6.89846 7.09990 7.17170 7.45343 7.51783 7.58995 7.61760 7.94813 8.03263 8.64608 8.98747 9.55888 11.05457 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.008130 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.660659 B = 3443.128526 C = 3817.033155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.180 3.820 4 H 0.000 1.000 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.505 5.505 14 C 0.040 3.960 15 C -0.104 4.104 16 C 0.091 3.909 17 C 0.059 3.941 18 O -0.562 6.562 19 O -0.366 6.366 20 C 0.027 3.973 21 C 0.038 3.962 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.372 0.628 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 3.975 12.480 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.072 3.928 4 H 0.018 0.982 5 C -0.537 4.537 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.229 5.229 14 C -0.088 4.088 15 C -0.142 4.142 16 C 0.050 3.950 17 C -0.019 4.019 18 O -0.366 6.366 19 O -0.285 6.285 20 C -0.070 4.070 21 C -0.091 4.091 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.218 0.782 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.130 3.180 12.164 12.752 hybrid contribution 1.133 0.005 -0.382 1.196 sum 3.264 3.184 11.782 12.633 Atomic orbital electron populations 1.21473 0.95334 0.98097 1.03318 1.21826 0.97562 0.97997 0.98305 1.19937 0.92963 0.90979 0.88897 0.98219 1.20894 1.31777 1.13162 0.87875 0.90183 1.24871 0.95551 0.96661 0.95862 1.69876 1.45587 1.40449 0.97901 0.86961 0.81074 0.84055 0.76838 1.20401 1.22539 1.19378 1.63579 1.56868 1.00531 1.01920 1.23037 0.98423 0.96381 0.90957 1.22588 1.00579 0.93966 0.97024 1.22956 0.82423 0.93691 0.95893 1.22742 0.95980 0.97555 0.85643 1.86576 1.72706 1.41345 1.36014 1.87939 1.21289 1.47817 1.71443 1.22745 0.99050 0.90539 0.94616 1.23173 0.98147 0.92285 0.95479 0.96006 0.92268 0.91650 0.93797 0.94772 0.92694 0.90955 0.93932 0.90498 0.89973 0.92416 0.93340 0.78210 0.90076 0.93175 0.94399 0.90874 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.48 37.16 0.35 -2.28 16 2 C -0.12 -2.67 4.99 -26.73 -0.13 -2.80 16 3 C 0.18 4.29 0.98 -68.87 -0.07 4.22 16 4 H 0.00 0.01 7.11 -51.93 -0.37 -0.36 16 5 C -0.50 -13.61 7.00 -34.44 -0.24 -13.86 16 6 H 0.08 2.37 7.58 -52.49 -0.40 1.97 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.88 22.14 24.37 -169.99 -4.14 18.00 16 10 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 11 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.63 6.53 56.52 0.37 -6.26 16 13 N -0.50 -10.46 4.19 -224.68 -0.94 -11.40 16 14 C 0.04 0.72 5.43 -2.30 -0.01 0.71 16 15 C -0.10 -1.64 6.04 -24.59 -0.15 -1.79 16 16 C 0.09 1.50 0.65 -88.80 -0.06 1.44 16 17 C 0.06 0.78 5.32 37.16 0.20 0.98 16 18 O -0.56 -7.09 13.35 -42.72 -0.57 -7.66 16 19 O -0.37 -6.60 10.37 -42.72 -0.44 -7.04 16 20 C 0.03 0.41 10.13 101.05 1.02 1.43 16 21 C 0.04 0.72 5.14 -2.84 -0.01 0.71 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 24 H 0.06 1.54 7.40 -51.93 -0.38 1.15 16 25 H 0.04 1.04 3.28 -51.93 -0.17 0.87 16 26 H 0.03 0.69 7.16 -51.93 -0.37 0.32 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.04 0.82 7.66 -51.93 -0.40 0.42 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.05 0.60 6.72 -51.93 -0.35 0.25 16 34 H 0.37 2.78 9.12 45.56 0.42 3.19 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 37 H 0.04 0.50 6.79 -51.93 -0.35 0.15 16 38 H 0.07 1.34 7.81 -51.93 -0.41 0.93 16 39 H 0.08 1.71 5.19 -51.92 -0.27 1.44 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -31.46 294.11 -5.57 -37.04 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.48 Total: 2.17 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 0.80 Total: -9.28 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.17 Total: -37.65 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.01 Total: -14.71 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.46 -5.57 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401975716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.473 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds