Wall clock time and date at job start Mon Mar 30 2020 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46985 * 2 1 4 4 C 1.53006 * 109.46770 * 240.00017 * 2 1 3 5 5 C 1.50703 * 109.46916 * 175.00360 * 4 2 1 6 6 H 1.08002 * 119.99644 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00068 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47390 * 59.99622 * 9 7 5 11 11 H 1.48494 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47053 * 299.99698 * 9 7 5 13 13 N 1.46899 * 109.47135 * 120.00124 * 2 1 3 14 14 C 1.46853 * 110.99889 * 59.21011 * 13 2 1 15 15 C 1.53033 * 109.52174 * 174.16510 * 14 13 2 16 16 C 1.53111 * 109.28389 * 59.17423 * 15 14 13 17 17 C 1.53118 * 109.16321 * 302.34908 * 16 15 14 18 18 O 1.42905 * 109.50296 * 297.71129 * 17 16 15 19 19 C 1.52999 * 109.54088 * 177.61158 * 17 16 15 20 20 O 1.42906 * 109.46756 * 60.09743 * 19 17 16 21 21 C 1.46845 * 110.99748 * 294.99955 * 13 2 1 22 22 H 1.08999 * 109.46967 * 59.99846 * 1 2 3 23 23 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46774 * 299.99836 * 1 2 3 25 25 H 1.08995 * 109.47085 * 295.00160 * 4 2 1 26 26 H 1.08995 * 109.47231 * 55.00512 * 4 2 1 27 27 H 0.96999 * 119.99852 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46130 * 294.17442 * 14 13 2 29 29 H 1.08995 * 109.46478 * 54.14069 * 14 13 2 30 30 H 1.09003 * 109.50225 * 179.11902 * 15 14 13 31 31 H 1.09005 * 109.50138 * 299.19248 * 15 14 13 32 32 H 1.08997 * 109.52814 * 182.44277 * 16 15 14 33 33 H 1.08999 * 109.52393 * 62.25326 * 16 15 14 34 34 H 0.96696 * 114.00036 * 299.80141 * 18 17 16 35 35 H 1.08994 * 109.47254 * 180.09336 * 19 17 16 36 36 H 1.09002 * 109.47238 * 300.09962 * 19 17 16 37 37 H 0.96703 * 113.99509 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.46347 * 65.82639 * 21 13 2 39 39 H 1.08997 * 109.45796 * 305.84711 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1928 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0604 -2.4374 10 1 6.6845 -1.6865 -1.2283 11 1 6.5868 -1.7595 -3.6505 12 1 6.4844 0.3706 -2.4967 13 7 2.0197 -0.6925 1.1994 14 6 1.5334 -2.0775 1.2428 15 6 2.1776 -2.8089 2.4226 16 6 1.8222 -2.0826 3.7228 17 6 2.2965 -0.6295 3.6325 18 8 3.7183 -0.5995 3.4920 19 6 1.8929 0.1205 4.9035 20 8 2.4966 -0.5053 6.0377 21 6 1.6489 0.0389 2.4176 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 4.0606 -2.2437 -4.0355 28 1 0.4501 -2.0785 1.3627 29 1 1.7963 -2.5840 0.3141 30 1 1.8046 -3.8323 2.4638 31 1 3.2602 -2.8211 2.2960 32 1 2.3145 -2.5749 4.5614 33 1 0.7423 -2.1048 3.8690 34 1 4.1949 -1.0071 4.2280 35 1 2.2296 1.1550 4.8374 36 1 0.8084 0.0973 5.0102 37 1 2.2833 -0.0816 6.8804 38 1 0.5650 0.0280 2.5319 39 1 1.9958 1.0694 2.3421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565049958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:19 Heat of formation + Delta-G solvation = -129.709512 kcal Electronic energy + Delta-G solvation = -19087.751548 eV Core-core repulsion = 16221.875523 eV Total energy + Delta-G solvation = -2865.876025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90315 -38.47348 -36.63610 -35.20331 -34.13107 -31.94453 -31.01192 -29.13055 -26.79353 -25.65898 -24.43386 -23.15654 -21.01235 -20.07988 -18.35838 -18.29834 -17.38951 -17.14537 -16.51871 -15.82686 -15.61669 -15.48887 -15.41934 -14.63828 -14.58484 -14.02884 -13.72993 -13.52798 -13.39585 -13.12404 -12.92745 -12.84429 -12.64076 -12.44913 -12.39003 -12.01804 -11.77464 -11.66161 -11.27753 -11.07738 -10.98683 -10.82263 -10.54014 -10.44670 -8.80262 -8.09482 -6.13269 1.40019 1.43401 1.51266 2.47896 2.91527 3.24626 3.34995 3.54714 3.85532 3.90700 4.07631 4.21481 4.32730 4.40326 4.46495 4.48895 4.56020 4.60090 4.65525 4.74117 4.78407 4.94691 4.97981 5.06531 5.11495 5.22872 5.23287 5.37661 5.49060 5.52954 5.72335 5.91301 6.35431 6.50566 6.57175 6.87842 6.99930 7.03751 7.52057 9.02234 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.007162 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.798895 B = 3908.790689 C = 4386.684966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 H 0.060 0.940 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.051 0.949 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.522 5.522 14 C 0.059 3.941 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.136 3.864 18 O -0.559 6.559 19 C 0.060 3.940 20 O -0.583 6.583 21 C 0.067 3.933 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.000 1.000 26 H -0.007 1.007 27 H 0.259 0.741 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.378 0.622 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.061 0.939 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 2.611 18.683 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 H 0.079 0.921 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.095 3.905 18 O -0.365 6.365 19 C -0.019 4.019 20 O -0.392 6.392 21 C -0.061 4.061 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.018 0.982 26 H 0.011 0.989 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.226 0.774 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.079 0.921 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.338 2.425 17.489 18.759 hybrid contribution 0.100 0.013 0.252 0.271 sum -6.238 2.438 17.741 18.962 Atomic orbital electron populations 1.22392 0.96961 1.01707 1.02199 1.21637 0.92210 0.97126 0.90567 0.92142 1.19085 0.95068 0.94515 0.91530 1.21434 0.93414 1.32340 1.06409 0.93024 1.25800 1.02675 0.95700 0.95746 1.70075 1.37005 1.38047 1.13012 0.85671 0.80924 0.78347 0.77064 1.20163 1.20958 1.19607 1.61747 1.60277 1.01647 1.00916 1.22025 0.96367 0.89732 0.98753 1.21474 1.00688 0.98578 0.94006 1.22083 1.01824 0.95333 0.97326 1.21329 0.81846 0.94699 0.92597 1.86689 1.17632 1.82940 1.49222 1.22717 0.97713 0.95770 0.85654 1.86348 1.75512 1.59276 1.18047 1.22019 0.97483 0.97637 0.88971 0.92376 0.92995 0.91157 0.98188 0.98910 0.93268 0.94405 0.93220 0.90652 0.93248 0.90490 0.90348 0.77400 0.92630 0.90997 0.74948 0.92075 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 8.50 71.98 0.61 -5.19 16 2 C 0.09 3.92 2.30 44.92 0.10 4.02 16 3 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 4 C 0.04 1.89 4.27 29.85 0.13 2.01 16 5 C -0.50 -29.60 8.84 25.60 0.23 -29.38 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 9 Si 0.95 47.60 29.54 68.60 2.03 49.63 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 13 N -0.52 -20.56 4.24 -871.11 -3.69 -24.26 16 14 C 0.06 2.19 4.64 86.32 0.40 2.59 16 15 C -0.11 -3.48 5.94 30.64 0.18 -3.30 16 16 C -0.13 -3.23 4.81 30.67 0.15 -3.08 16 17 C 0.14 3.65 0.82 -10.74 -0.01 3.64 16 18 O -0.56 -18.28 12.31 -139.83 -1.72 -20.00 16 19 C 0.06 1.13 6.17 71.98 0.44 1.57 16 20 O -0.58 -9.83 12.54 -139.83 -1.75 -11.59 16 21 C 0.07 2.04 4.00 86.33 0.34 2.38 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.73 6.52 -2.39 -0.02 1.71 16 24 H 0.07 1.91 6.65 -2.39 -0.02 1.89 16 25 H 0.00 0.00 6.05 -2.39 -0.01 -0.02 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.04 1.24 6.62 -2.39 -0.02 1.23 16 29 H 0.05 2.25 5.93 -2.39 -0.01 2.24 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.84 7.80 -2.38 -0.02 1.83 16 32 H 0.08 1.83 7.77 -2.39 -0.02 1.81 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.38 10.11 8.57 -74.06 -0.63 9.47 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.40 2.90 9.12 -74.06 -0.68 2.23 16 38 H 0.06 1.56 6.73 -2.39 -0.02 1.54 16 39 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 Total: -1.00 -72.01 301.78 -2.08 -74.09 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.27 Total: 15.37 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.04 Total: -24.47 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -3.41 Total: -83.04 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -3.47 Total: -31.59 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -72.01 -2.08 -74.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565049958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.619 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds