Wall clock time and date at job start Mon Mar 30 2020 03:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.09004 * 109.47629 * 301.74698 * 3 2 1 5 5 C 1.50694 * 109.47517 * 181.74180 * 3 2 1 6 6 H 1.08002 * 120.00144 * 245.38787 * 5 3 2 7 7 C 1.37880 * 120.00107 * 65.38527 * 5 3 2 8 8 N 1.31513 * 119.99594 * 6.91014 * 7 5 3 9 9 Si 1.86800 * 120.00170 * 186.91349 * 7 5 3 10 10 H 1.48503 * 109.47316 * 94.98566 * 9 7 5 11 11 H 1.48498 * 109.47101 * 214.98885 * 9 7 5 12 12 H 1.48504 * 109.46954 * 334.98792 * 9 7 5 13 13 N 1.46906 * 109.46831 * 61.74168 * 3 2 1 14 14 C 1.47008 * 110.99841 * 41.14901 * 13 3 2 15 15 C 1.53098 * 109.25634 * 177.60454 * 14 13 3 16 16 O 1.43023 * 109.25862 * 56.84927 * 15 14 13 17 17 C 1.43014 * 113.73628 * 301.33155 * 16 15 14 18 18 C 1.47015 * 111.00117 * 277.51144 * 13 3 2 19 19 H 1.09000 * 109.54024 * 62.43711 * 18 13 3 20 20 C 1.53003 * 109.50718 * 302.33153 * 18 13 3 21 21 C 1.53001 * 109.46821 * 176.62722 * 20 18 13 22 22 O 1.42902 * 109.46789 * 177.13890 * 21 20 18 23 23 H 1.09006 * 109.46560 * 281.35432 * 1 2 3 24 24 H 1.08998 * 109.47518 * 41.35059 * 1 2 3 25 25 H 1.08993 * 109.47267 * 161.36011 * 1 2 3 26 26 H 1.09003 * 109.46986 * 240.00317 * 2 1 3 27 27 H 1.08997 * 109.47388 * 120.00501 * 2 1 3 28 28 H 0.97004 * 119.99791 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.50826 * 57.67620 * 14 13 3 30 30 H 1.08994 * 109.54522 * 297.56314 * 14 13 3 31 31 H 1.08999 * 109.51255 * 296.91327 * 15 14 13 32 32 H 1.09003 * 109.50885 * 176.78342 * 15 14 13 33 33 H 1.08998 * 109.50224 * 298.73040 * 17 16 15 34 34 H 1.08996 * 109.53769 * 178.62379 * 17 16 15 35 35 H 1.08994 * 109.47207 * 56.62461 * 20 18 13 36 36 H 1.09008 * 109.46840 * 296.61906 * 20 18 13 37 37 H 1.08999 * 109.46649 * 297.13345 * 21 20 18 38 38 H 1.08993 * 109.47298 * 57.13649 * 21 20 18 39 39 H 0.96699 * 114.00039 * 184.99375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6514 1.9653 -0.8739 5 6 3.5464 1.4427 -0.0432 6 1 4.1106 1.8237 0.7952 7 6 4.2043 0.9565 -1.1530 8 7 3.5229 0.6194 -2.2261 9 14 6.0635 0.7766 -1.1324 10 1 6.4222 -0.6127 -0.7496 11 1 6.6046 1.0732 -2.4831 12 1 6.6418 1.7262 -0.1480 13 7 1.5850 2.1226 1.2200 14 6 1.6932 1.2371 2.3884 15 6 1.2667 2.0029 3.6436 16 8 -0.0616 2.5016 3.4633 17 6 -0.2029 3.3681 2.3344 18 6 0.2087 2.6161 1.0660 19 1 -0.4649 1.7740 0.9073 20 6 0.1364 3.5616 -0.1348 21 6 -1.3117 4.0086 -0.3453 22 8 -1.3695 4.9432 -1.4247 23 1 -0.3633 0.2023 1.0076 24 1 -0.3634 0.7714 -0.6789 25 1 -0.3633 -0.9737 -0.3284 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9857 0.2769 -3.0069 29 1 2.7253 0.9042 2.4985 30 1 1.0443 0.3721 2.2517 31 1 1.9488 2.8365 3.8109 32 1 1.2907 1.3340 4.5039 33 1 0.4364 4.2413 2.4636 34 1 -1.2415 3.6871 2.2475 35 1 0.4902 3.0442 -1.0264 36 1 0.7625 4.4342 0.0517 37 1 -1.9287 3.1417 -0.5818 38 1 -1.6821 4.4808 0.5645 39 1 -2.2455 5.3275 -1.5657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694963192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:28 Heat of formation + Delta-G solvation = -106.656495 kcal Electronic energy + Delta-G solvation = -19391.295388 eV Core-core repulsion = 16526.419017 eV Total energy + Delta-G solvation = -2864.876371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12455 -37.99722 -37.71790 -34.88042 -33.91173 -32.51439 -30.02365 -29.21490 -26.94212 -25.41714 -24.53388 -22.57701 -21.74101 -20.53381 -18.52552 -18.33092 -17.39024 -17.06646 -16.44572 -16.33619 -15.96492 -15.65289 -15.39341 -15.08179 -14.49077 -14.31094 -13.84791 -13.43192 -13.32562 -13.02975 -12.80916 -12.71431 -12.52296 -12.46179 -12.20665 -12.09410 -11.84604 -11.81303 -11.43989 -11.22465 -10.97850 -10.77065 -10.42832 -10.27784 -8.75160 -8.11053 -6.17549 1.39629 1.41288 1.51432 2.42525 2.95529 3.07393 3.19618 3.59065 3.86772 4.18169 4.20152 4.24385 4.30463 4.34071 4.39730 4.44744 4.52690 4.56703 4.62963 4.69692 4.80306 4.86967 4.99151 5.02284 5.07039 5.16110 5.21601 5.34606 5.41017 5.59086 5.71226 5.75294 6.20039 6.27024 6.53938 6.73593 6.94960 6.97802 7.49728 8.96532 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.008746 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.285216 B = 3200.665626 C = 3842.432257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.216 3.784 4 H 0.025 0.975 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.533 5.533 14 C 0.023 3.977 15 C 0.068 3.932 16 O -0.396 6.396 17 C 0.071 3.929 18 C 0.035 3.965 19 H 0.066 0.934 20 C -0.110 4.110 21 C 0.084 3.916 22 O -0.596 6.596 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 3.723 8.019 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.109 3.891 4 H 0.042 0.958 5 C -0.550 4.550 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.258 5.258 14 C -0.106 4.106 15 C -0.009 4.009 16 O -0.314 6.314 17 C -0.006 4.006 18 C -0.074 4.074 19 H 0.084 0.916 20 C -0.148 4.148 21 C 0.006 3.994 22 O -0.405 6.405 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.395 3.875 8.012 12.941 hybrid contribution 0.531 -0.820 -0.909 1.334 sum -8.864 3.056 7.103 11.762 Atomic orbital electron populations 1.22042 0.96540 1.00689 1.00608 1.21994 0.94303 1.01110 1.00271 1.19236 0.93774 0.88725 0.87388 0.95767 1.21389 0.92392 1.39607 1.01576 0.93103 1.25634 1.02203 0.95749 0.94989 1.70068 1.36877 1.45307 1.03801 0.85638 0.81053 0.78341 0.77162 1.20225 1.21281 1.19505 1.62449 1.20011 1.38759 1.04611 1.22728 1.01355 0.95068 0.91421 1.22770 0.83392 0.97910 0.96851 1.87887 1.29944 1.65843 1.47766 1.22855 1.02419 0.91724 0.83594 1.22574 0.91488 0.97907 0.95441 0.91628 1.21471 0.96860 0.98929 0.97530 1.22174 0.95473 0.91974 0.89775 1.86481 1.38101 1.61713 1.54165 0.92045 0.93771 0.93126 0.93616 0.93897 0.93163 0.91144 0.94195 0.92825 0.86536 0.92974 0.86328 0.93565 0.92434 0.92961 0.90792 0.75243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.03 71.98 0.58 -4.79 16 2 C -0.14 -6.36 4.73 30.59 0.14 -6.21 16 3 C 0.22 10.68 1.62 44.16 0.07 10.76 16 4 H 0.02 1.37 5.25 -2.38 -0.01 1.36 16 5 C -0.51 -28.29 8.20 25.60 0.21 -28.08 16 6 H 0.05 2.85 7.78 -2.91 -0.02 2.82 16 7 C 0.01 0.71 5.23 84.66 0.44 1.16 16 8 N -0.92 -53.80 12.03 21.45 0.26 -53.54 16 9 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 N -0.53 -22.15 4.39 -849.31 -3.73 -25.88 16 14 C 0.02 0.83 4.36 86.32 0.38 1.20 16 15 C 0.07 2.00 7.01 72.02 0.50 2.50 16 16 O -0.40 -11.97 10.83 -148.98 -1.61 -13.58 16 17 C 0.07 2.02 5.94 72.01 0.43 2.45 16 18 C 0.03 1.19 1.46 44.93 0.07 1.26 16 19 H 0.07 2.26 3.90 -2.39 -0.01 2.25 16 20 C -0.11 -3.91 4.92 30.60 0.15 -3.76 16 21 C 0.08 2.18 6.85 71.98 0.49 2.67 16 22 O -0.60 -16.14 13.66 -148.98 -2.03 -18.18 16 23 H 0.06 2.12 5.01 -2.38 -0.01 2.11 16 24 H 0.04 1.69 7.19 -2.39 -0.02 1.68 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 2.43 6.75 -2.39 -0.02 2.41 16 27 H 0.04 1.94 6.31 -2.39 -0.02 1.92 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.78 7.68 -2.39 -0.02 2.76 16 30 H 0.04 1.46 4.92 -2.39 -0.01 1.45 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 2.59 6.63 -2.39 -0.02 2.58 16 35 H 0.05 2.03 5.80 -2.39 -0.01 2.01 16 36 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.46 6.46 -2.39 -0.02 1.44 16 39 H 0.40 6.00 9.12 -74.06 -0.68 5.32 16 Total: -1.00 -65.56 290.07 -1.25 -66.80 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.38 Total: 18.72 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.46 Total: -20.85 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -3.47 Total: -79.42 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -3.65 Total: -31.76 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.56 -1.25 -66.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694963192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.852 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds