Wall clock time and date at job start Mon Mar 30 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47487 * 2 1 4 4 C 1.53004 * 109.46957 * 239.99804 * 2 1 3 5 5 C 1.50706 * 109.46862 * 175.00149 * 4 2 1 6 6 H 1.07994 * 120.00211 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99729 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00146 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46864 * 59.99970 * 9 7 5 11 11 H 1.48493 * 109.47422 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46894 * 300.00393 * 9 7 5 13 13 N 1.46896 * 109.47181 * 120.00348 * 2 1 3 14 14 C 1.48527 * 111.00241 * 32.51315 * 13 2 1 15 15 C 1.54941 * 103.23305 * 200.28020 * 14 13 2 16 16 H 1.08996 * 110.87711 * 278.98818 * 15 14 13 17 17 O 1.42891 * 110.72464 * 155.76988 * 15 14 13 18 18 C 1.54594 * 102.91496 * 37.41548 * 15 14 13 19 19 C 1.47904 * 110.99747 * 275.12037 * 13 2 1 20 20 C 1.52995 * 110.08236 * 26.39854 * 19 13 2 21 21 C 1.52996 * 109.91915 * 265.19451 * 19 13 2 22 22 O 1.42896 * 109.47615 * 180.95537 * 21 19 13 23 23 H 1.08995 * 109.47429 * 172.25034 * 1 2 3 24 24 H 1.09000 * 109.46796 * 292.25737 * 1 2 3 25 25 H 1.09004 * 109.46901 * 52.24980 * 1 2 3 26 26 H 1.08997 * 109.47185 * 295.00288 * 4 2 1 27 27 H 1.09003 * 109.46960 * 55.00768 * 4 2 1 28 28 H 0.97001 * 119.99908 * 179.97438 * 8 7 5 29 29 H 1.09010 * 110.66551 * 81.84834 * 14 13 2 30 30 H 1.09002 * 110.81316 * 318.78980 * 14 13 2 31 31 H 0.96701 * 114.00000 * 66.50506 * 17 15 14 32 32 H 1.09003 * 110.30722 * 219.12365 * 18 15 14 33 33 H 1.09004 * 110.39504 * 97.00472 * 18 15 14 34 34 H 1.09000 * 109.47052 * 312.90962 * 20 19 13 35 35 H 1.09000 * 109.47537 * 72.90761 * 20 19 13 36 36 H 1.09001 * 109.47655 * 192.90425 * 20 19 13 37 37 H 1.09005 * 109.47656 * 300.95887 * 21 19 13 38 38 H 1.09006 * 109.47139 * 60.95580 * 21 19 13 39 39 H 0.96703 * 114.00443 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8362 -3.3006 9 14 6.0920 -1.0604 -2.4375 10 1 6.6845 -1.6865 -1.2283 11 1 6.5868 -1.7595 -3.6505 12 1 6.4843 0.3705 -2.4967 13 7 2.0196 -0.6925 1.1994 14 6 1.0947 -1.7838 1.5988 15 6 1.4523 -2.0249 3.0870 16 1 2.3384 -2.6533 3.1767 17 8 0.3492 -2.6068 3.7843 18 6 1.7383 -0.5982 3.6091 19 6 2.0801 0.2281 2.3554 20 6 1.0623 1.3571 2.1817 21 6 3.4886 0.8116 2.4839 22 8 3.5423 1.6818 3.6160 23 1 -0.3634 -1.0182 -0.1386 24 1 -0.3633 0.3893 0.9511 25 1 -0.3633 0.6292 -0.8126 26 1 1.7515 -1.7715 -1.2056 27 1 1.6054 -0.2617 -2.1370 28 1 4.0605 -2.2424 -4.0364 29 1 1.2805 -2.6811 1.0084 30 1 0.0564 -1.4675 1.4990 31 1 0.1288 -3.5026 3.4941 32 1 2.5838 -0.6094 4.2970 33 1 0.8559 -0.1901 4.1021 34 1 1.1388 1.7632 1.1731 35 1 0.0568 0.9676 2.3411 36 1 1.2660 2.1448 2.9070 37 1 4.2070 0.0021 2.6135 38 1 3.7329 1.3732 1.5821 39 1 4.4078 2.0889 3.7586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698209312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:28 Heat of formation + Delta-G solvation = -105.702374 kcal Electronic energy + Delta-G solvation = -19303.479096 eV Core-core repulsion = 16438.644098 eV Total energy + Delta-G solvation = -2864.834998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47517 -37.73825 -37.44726 -35.35173 -33.86184 -31.86552 -29.92278 -29.35353 -27.17334 -26.02746 -24.83916 -22.92979 -20.98738 -19.56388 -18.46738 -18.41538 -18.14044 -16.92569 -16.55888 -15.96133 -15.69675 -15.57699 -14.94776 -14.71517 -14.33059 -13.98078 -13.83019 -13.78319 -13.27765 -13.06067 -13.04073 -12.71106 -12.48533 -12.43488 -12.38806 -12.00447 -11.80280 -11.69054 -11.34527 -11.09230 -10.92450 -10.85002 -10.73484 -10.45867 -9.09072 -8.08394 -6.13174 1.42020 1.44441 1.51540 2.47721 2.71866 3.25553 3.38189 3.56104 3.72351 3.82945 4.08361 4.17485 4.20845 4.35620 4.38025 4.43981 4.55342 4.63264 4.71627 4.76308 4.85432 4.90270 4.98336 5.06539 5.10513 5.14378 5.23692 5.33198 5.35023 5.49369 5.70565 5.89124 6.20421 6.31783 6.49199 6.86298 6.92703 7.00006 7.52225 9.03660 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.008067 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.422774 B = 3470.219747 C = 3850.052008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.043 3.957 5 C -0.496 4.496 6 H 0.059 0.941 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.496 5.496 14 C 0.003 3.997 15 C 0.104 3.896 16 H 0.071 0.929 17 O -0.572 6.572 18 C -0.099 4.099 19 C 0.091 3.909 20 C -0.169 4.169 21 C 0.103 3.897 22 O -0.579 6.579 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.057 0.943 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.258 0.742 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 3.169 13.695 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.087 0.913 4 C 0.005 3.995 5 C -0.535 4.535 6 H 0.077 0.923 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.221 5.221 14 C -0.125 4.125 15 C 0.045 3.955 16 H 0.089 0.911 17 O -0.379 6.379 18 C -0.137 4.137 19 C 0.002 3.998 20 C -0.227 4.227 21 C 0.024 3.976 22 O -0.386 6.386 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.245 0.755 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -3.603 3.278 13.776 14.611 hybrid contribution 0.781 -0.293 -1.010 1.309 sum -2.822 2.986 12.766 13.411 Atomic orbital electron populations 1.22810 0.96841 1.01817 1.02845 1.21805 0.92434 0.97139 0.90624 0.91310 1.18949 0.95247 0.93987 0.91279 1.21436 0.93161 1.32343 1.06541 0.92288 1.25855 1.02789 0.95728 0.95800 1.70094 1.37123 1.38093 1.13014 0.85661 0.80710 0.78385 0.77216 1.19564 1.21542 1.19428 1.64579 1.46568 1.09114 1.01884 1.23982 0.96529 0.95655 0.96354 1.22623 0.88779 0.94778 0.89339 0.91140 1.86431 1.51729 1.36015 1.63749 1.22319 1.02307 0.92705 0.96351 1.21683 0.94589 0.92832 0.90735 1.22706 0.98376 0.98852 1.02719 1.21791 0.95882 0.92296 0.87602 1.86328 1.39245 1.64444 1.48572 0.92941 0.90119 0.92439 0.99281 0.99151 0.93358 0.91492 0.91395 0.75503 0.90128 0.90454 0.91764 0.91766 0.91254 0.93473 0.94579 0.75460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.18 7.06 71.98 0.51 -5.67 16 2 C 0.09 3.53 1.78 44.92 0.08 3.61 16 3 H 0.07 2.80 6.08 -2.38 -0.01 2.78 16 4 C 0.04 2.22 4.59 29.85 0.14 2.35 16 5 C -0.50 -27.72 8.84 25.60 0.23 -27.50 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 9 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 N -0.50 -18.21 4.49 -809.28 -3.64 -21.85 16 14 C 0.00 0.09 5.49 86.65 0.48 0.57 16 15 C 0.10 2.90 4.44 31.80 0.14 3.04 16 16 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 17 O -0.57 -14.02 13.40 -148.98 -2.00 -16.02 16 18 C -0.10 -2.78 5.71 31.47 0.18 -2.60 16 19 C 0.09 2.83 0.64 3.67 0.00 2.83 16 20 C -0.17 -4.82 6.82 71.98 0.49 -4.33 16 21 C 0.10 3.10 6.07 71.98 0.44 3.54 16 22 O -0.58 -14.35 12.33 -148.98 -1.84 -16.18 16 23 H 0.05 1.77 6.74 -2.39 -0.02 1.76 16 24 H 0.08 2.34 4.23 -2.39 -0.01 2.33 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H -0.01 -0.64 8.10 -2.39 -0.02 -0.65 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 2.11 5.19 -2.39 -0.01 2.09 16 31 H 0.40 6.38 9.12 -74.06 -0.68 5.70 16 32 H 0.08 2.19 7.51 -2.39 -0.02 2.17 16 33 H 0.08 2.15 7.53 -2.38 -0.02 2.13 16 34 H 0.06 1.95 4.91 -2.39 -0.01 1.94 16 35 H 0.06 1.73 6.07 -2.39 -0.01 1.71 16 36 H 0.07 1.89 7.33 -2.39 -0.02 1.87 16 37 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.40 6.22 9.12 -74.06 -0.68 5.55 16 Total: -1.00 -67.07 298.11 -2.31 -69.37 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.29 Total: 19.25 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.14 Total: -24.04 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.35 Total: -79.20 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -3.83 Total: -32.20 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.07 -2.31 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698209312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.328 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds