Wall clock time and date at job start Mon Mar 30 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47195 * 2 1 4 4 C 1.52999 * 109.47623 * 119.99910 * 2 1 3 5 5 C 1.50696 * 109.47634 * 186.96846 * 4 2 1 6 6 H 1.08002 * 119.99655 * 5.53999 * 5 4 2 7 7 C 1.37878 * 120.00037 * 185.54943 * 5 4 2 8 8 N 1.31515 * 119.99790 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00193 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47345 * 89.99826 * 9 7 5 11 11 H 1.48499 * 109.47259 * 210.00380 * 9 7 5 12 12 H 1.48501 * 109.47003 * 330.00213 * 9 7 5 13 13 N 1.46908 * 109.47402 * 240.00084 * 2 1 3 14 14 C 1.46901 * 110.99928 * 98.04230 * 13 2 1 15 15 C 1.52997 * 109.54562 * 307.19916 * 14 13 2 16 16 O 1.42906 * 109.46928 * 304.44205 * 15 14 13 17 17 C 1.53179 * 109.53878 * 186.93096 * 14 13 2 18 18 C 1.53086 * 109.16646 * 297.11299 * 17 14 13 19 19 O 1.42910 * 109.41538 * 302.39779 * 18 17 14 20 20 C 1.42894 * 114.09839 * 61.15397 * 19 18 17 21 21 C 1.53087 * 109.41922 * 298.84349 * 20 19 18 22 22 H 1.09000 * 109.47418 * 291.18955 * 1 2 3 23 23 H 1.09003 * 109.46781 * 171.19359 * 1 2 3 24 24 H 1.08998 * 109.47576 * 51.19320 * 1 2 3 25 25 H 1.08999 * 109.46831 * 306.96847 * 4 2 1 26 26 H 1.09002 * 109.47077 * 66.96409 * 4 2 1 27 27 H 0.97003 * 120.00175 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99748 * 334.09215 * 13 2 1 29 29 H 1.08997 * 109.47195 * 64.43589 * 15 14 13 30 30 H 1.09002 * 109.47206 * 184.43902 * 15 14 13 31 31 H 0.96700 * 113.99732 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.52500 * 57.02455 * 17 14 13 33 33 H 1.08998 * 109.51809 * 177.21171 * 17 14 13 34 34 H 1.08994 * 109.48471 * 182.40816 * 18 17 14 35 35 H 1.09005 * 109.48771 * 62.37996 * 18 17 14 36 36 H 1.09005 * 109.47995 * 178.85635 * 20 19 18 37 37 H 1.08998 * 109.49184 * 58.83639 * 20 19 18 38 38 H 1.09007 * 109.51918 * 297.70463 * 21 20 19 39 39 H 1.08996 * 109.52866 * 177.51515 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5371 -0.5737 1.3384 6 1 4.0610 0.0527 0.6316 7 6 4.2380 -1.2385 2.3222 8 7 5.5445 -1.1101 2.3997 9 14 3.3317 -2.3214 3.5450 10 1 3.2501 -3.7060 3.0144 11 1 4.0635 -2.3288 4.8371 12 1 1.9610 -1.7904 3.7555 13 7 2.0197 -0.6925 -1.1995 14 6 2.3761 0.2674 -2.2529 15 6 1.1981 1.2102 -2.5061 16 8 0.0334 0.4437 -2.8194 17 6 2.7160 -0.4885 -3.5411 18 6 3.9436 -1.3702 -3.2974 19 8 5.0343 -0.5560 -2.8617 20 6 4.7912 0.1380 -1.6365 21 6 3.5977 1.0802 -1.8133 22 1 -0.3634 0.3714 0.9582 23 1 -0.3633 -1.0156 -0.1573 24 1 -0.3634 0.6440 -0.8008 25 1 1.5785 -0.2844 2.1348 26 1 1.7821 -1.7785 1.1891 27 1 6.0376 -1.5775 3.0921 28 1 1.3414 -1.3606 -1.5335 29 1 1.0112 1.8063 -1.6129 30 1 1.4340 1.8704 -3.3408 31 1 -0.7540 0.9777 -2.9927 32 1 1.8709 -1.1128 -3.8309 33 1 2.9323 0.2253 -4.3359 34 1 4.2159 -1.8779 -4.2226 35 1 3.7135 -2.1102 -2.5308 36 1 5.6742 0.7167 -1.3651 37 1 4.5722 -0.5820 -0.8480 38 1 3.8318 1.8258 -2.5733 39 1 3.3831 1.5778 -0.8676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709992474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:58 Heat of formation + Delta-G solvation = -95.796393 kcal Electronic energy + Delta-G solvation = -19652.431249 eV Core-core repulsion = 16788.025807 eV Total energy + Delta-G solvation = -2864.405442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77857 -37.06552 -35.53262 -33.33100 -32.04576 -30.57833 -28.69916 -27.49225 -26.66490 -23.35532 -22.57487 -22.09107 -19.65465 -18.66369 -17.26015 -16.67249 -15.86645 -15.51454 -15.09554 -14.69145 -14.17810 -14.16356 -13.91333 -13.07874 -12.82739 -12.64218 -12.32343 -12.04044 -11.87185 -11.73926 -11.62601 -11.43949 -11.00307 -10.79768 -10.53962 -10.28967 -10.15227 -9.83005 -9.73176 -9.57623 -9.43827 -9.11196 -8.61434 -8.38060 -7.52656 -5.89275 -3.82836 3.39216 3.46603 3.49749 4.20729 4.56263 4.59125 4.80025 5.01386 5.19574 5.38125 5.46191 5.50847 5.60923 5.69307 5.74105 5.87533 5.90993 5.95763 6.08749 6.11038 6.21249 6.34102 6.37885 6.50484 6.53646 6.60441 6.73730 6.93598 7.12338 7.29396 7.35592 7.59432 7.89621 7.94933 7.96377 8.19203 8.73312 9.18169 9.74696 11.23277 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.009759 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.702335 B = 2868.352827 C = 3681.493220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.064 0.936 4 C -0.003 4.003 5 C -0.499 4.499 6 H 0.088 0.912 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.271 1.271 13 N -0.646 5.646 14 C 0.121 3.879 15 C 0.047 3.953 16 O -0.564 6.564 17 C -0.136 4.136 18 C 0.069 3.931 19 O -0.395 6.395 20 C 0.055 3.945 21 C -0.134 4.134 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.010 0.990 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.336 0.664 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.372 0.628 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 3.934 -10.585 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.041 4.041 5 C -0.536 4.536 6 H 0.106 0.894 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.196 1.196 13 N -0.276 5.276 14 C 0.029 3.971 15 C -0.033 4.033 16 O -0.369 6.369 17 C -0.174 4.174 18 C -0.008 4.008 19 O -0.314 6.314 20 C -0.020 4.020 21 C -0.172 4.172 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.218 0.782 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.686 3.330 -10.249 13.237 hybrid contribution -2.046 0.256 0.518 2.126 sum -9.731 3.586 -9.732 14.222 Atomic orbital electron populations 1.22692 0.98777 1.01473 1.00864 1.21563 0.90344 0.97772 0.91648 0.91771 1.19607 0.97732 0.95325 0.91414 1.21257 0.90027 1.28450 1.13913 0.89387 1.24989 0.94638 0.96584 0.97449 1.69898 1.06188 1.44116 1.34493 0.86878 0.80202 0.81562 0.81070 1.20674 1.21931 1.19564 1.60681 1.47356 1.15635 1.03918 1.20955 0.92084 0.91909 0.92133 1.23097 0.86990 0.94565 0.98600 1.86484 1.20188 1.37585 1.92614 1.22142 0.99253 0.99736 0.96240 1.22379 0.86285 0.92920 0.99235 1.87790 1.39081 1.62651 1.41860 1.22922 0.95868 0.96011 0.87240 1.22132 0.95479 0.98093 1.01476 0.93398 0.93210 0.92681 0.97165 0.96891 0.93105 0.84538 0.93214 0.94328 0.78228 0.91018 0.91921 0.90596 0.91750 0.90213 0.87055 0.92568 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.47 37.15 0.31 -2.53 16 2 C 0.10 1.80 1.75 -67.71 -0.12 1.68 16 3 H 0.06 1.24 5.08 -51.93 -0.26 0.98 16 4 C 0.00 -0.07 3.71 -27.89 -0.10 -0.17 16 5 C -0.50 -13.39 8.65 -34.44 -0.30 -13.69 16 6 H 0.09 2.42 4.53 -52.49 -0.24 2.18 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -27.42 13.96 55.43 0.77 -26.64 16 9 Si 0.87 21.96 27.36 -169.99 -4.65 17.31 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.59 6.70 56.52 0.38 -6.21 16 13 N -0.65 -11.48 4.42 -92.86 -0.41 -11.89 16 14 C 0.12 1.90 0.36 -131.42 -0.05 1.85 16 15 C 0.05 0.62 4.96 37.16 0.18 0.80 16 16 O -0.56 -6.75 10.48 -35.23 -0.37 -7.12 16 17 C -0.14 -1.99 4.85 -26.59 -0.13 -2.12 16 18 C 0.07 1.13 6.68 37.20 0.25 1.38 16 19 O -0.39 -7.64 10.77 -35.23 -0.38 -8.01 16 20 C 0.06 1.11 5.89 37.20 0.22 1.33 16 21 C -0.13 -2.29 4.54 -26.59 -0.12 -2.41 16 22 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 23 H 0.05 0.79 7.93 -51.93 -0.41 0.37 16 24 H 0.05 0.76 4.66 -51.93 -0.24 0.52 16 25 H 0.01 0.24 7.54 -51.93 -0.39 -0.15 16 26 H 0.01 0.31 7.26 -51.93 -0.38 -0.07 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.34 5.80 7.70 -39.29 -0.30 5.50 16 29 H 0.05 0.67 5.94 -51.93 -0.31 0.36 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.37 2.90 9.12 45.56 0.42 3.32 16 32 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.16 7.75 -51.93 -0.40 0.76 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.11 2.66 5.16 -51.93 -0.27 2.39 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -30.07 286.87 -5.86 -35.93 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.20 Total: 8.29 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 0.05 Total: -12.18 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.36 Total: -38.54 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.75 Total: -15.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.65 Total: 17.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.07 -5.86 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709992474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.864 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds