Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99822 * 2 1 4 4 C 1.52999 * 110.80313 * 182.92784 * 3 2 1 5 5 N 1.46498 * 109.47062 * 55.72293 * 4 3 2 6 6 C 1.36943 * 119.99905 * 274.70424 * 5 4 3 7 7 H 1.08003 * 119.99767 * 333.72240 * 6 5 4 8 8 C 1.38814 * 120.00025 * 153.71829 * 6 5 4 9 9 N 1.31620 * 119.99839 * 49.22717 * 8 6 5 10 10 Si 1.86802 * 119.99942 * 229.22416 * 8 6 5 11 11 H 1.48502 * 109.46961 * 90.00471 * 10 8 6 12 12 H 1.48498 * 109.46781 * 210.00232 * 10 8 6 13 13 H 1.48496 * 109.47236 * 330.00489 * 10 8 6 14 14 C 1.46496 * 120.00360 * 94.70398 * 5 4 3 15 15 C 1.53010 * 109.47059 * 124.51536 * 14 5 4 16 16 C 1.52995 * 109.47545 * 244.51317 * 14 5 4 17 17 C 1.54814 * 110.90755 * 59.30405 * 3 2 1 18 18 C 1.54103 * 104.18505 * 262.64820 * 17 3 2 19 19 O 1.43742 * 107.29547 * 2.02284 * 18 17 3 20 20 C 1.44375 * 106.97514 * 333.49307 * 19 18 17 21 21 H 1.09000 * 109.47146 * 299.99554 * 1 2 3 22 22 H 1.09004 * 109.47655 * 59.99749 * 1 2 3 23 23 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46990 * 175.71479 * 4 3 2 25 25 H 1.08998 * 109.47522 * 295.71859 * 4 3 2 26 26 H 0.96995 * 119.99649 * 179.97438 * 9 8 6 27 27 H 1.08997 * 109.47506 * 4.51710 * 14 5 4 28 28 H 1.08996 * 109.46912 * 22.54812 * 15 14 5 29 29 H 1.08996 * 109.46945 * 142.54706 * 15 14 5 30 30 H 1.09001 * 109.46917 * 262.54561 * 15 14 5 31 31 H 1.09000 * 109.47201 * 90.49389 * 16 14 5 32 32 H 1.09001 * 109.47551 * 210.50274 * 16 14 5 33 33 H 1.09005 * 109.47238 * 330.50289 * 16 14 5 34 34 H 1.08998 * 110.49138 * 143.96982 * 17 3 2 35 35 H 1.08998 * 110.59976 * 21.37388 * 17 3 2 36 36 H 1.09001 * 109.87782 * 242.60203 * 18 17 3 37 37 H 1.08997 * 110.00431 * 121.52281 * 18 17 3 38 38 H 1.09000 * 110.61693 * 158.55869 * 20 19 18 39 39 H 1.08998 * 110.61972 * 281.55080 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5361 1.2209 -0.0731 5 7 3.9261 0.4411 -1.2503 6 6 3.9909 -0.9247 -1.1761 7 1 4.1785 -1.4057 -0.2275 8 6 3.8153 -1.6911 -2.3202 9 7 4.4863 -1.4022 -3.4151 10 14 2.6269 -3.1323 -2.3057 11 1 1.2772 -2.6649 -2.7120 12 1 3.0978 -4.1716 -3.2561 13 1 2.5611 -3.7058 -0.9376 14 6 4.2469 1.1224 -2.5069 15 6 5.6462 0.7097 -2.9681 16 6 3.2225 0.7326 -3.5744 17 6 1.5604 2.1104 1.2436 18 6 0.3911 2.9740 0.7318 19 8 0.1837 2.6369 -0.6500 20 6 1.4473 2.1624 -1.1624 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.9524 2.2255 -0.1485 25 1 3.9166 0.7365 0.8261 26 1 4.3638 -1.9380 -4.2144 27 1 4.2186 2.2011 -2.3530 28 1 5.9096 -0.2473 -2.5177 29 1 5.6579 0.6157 -4.0539 30 1 6.3679 1.4667 -2.6612 31 1 2.3915 1.4377 -3.5552 32 1 3.6949 0.7543 -4.5565 33 1 2.8512 -0.2720 -3.3720 34 1 2.3725 2.7423 1.6033 35 1 1.2220 1.4393 2.0330 36 1 0.6437 4.0305 0.8217 37 1 -0.5104 2.7585 1.3053 38 1 1.2956 1.5506 -2.0517 39 1 2.1119 2.9987 -1.3795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710330043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -26.180753 kcal Electronic energy + Delta-G solvation = -20106.725070 eV Core-core repulsion = 17245.338389 eV Total energy + Delta-G solvation = -2861.386681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90418 -36.72795 -35.76214 -32.41968 -30.99216 -30.19263 -28.64038 -26.05540 -25.51424 -25.12980 -22.92364 -21.92196 -19.85913 -19.63321 -16.83051 -16.16589 -15.73915 -15.10574 -14.85199 -14.79589 -13.80670 -13.76600 -13.36893 -13.16662 -12.69010 -12.24150 -12.11986 -11.86803 -11.75713 -11.43174 -11.29069 -11.10940 -10.87851 -10.75160 -10.53739 -10.22410 -10.15325 -9.89325 -9.70221 -9.56347 -9.45376 -9.13686 -8.60777 -7.56062 -6.72569 -5.94425 -2.92886 3.53532 3.64838 3.72386 4.23991 4.43929 4.62698 4.90792 5.09264 5.17967 5.25280 5.34429 5.62409 5.69908 5.77954 5.88956 5.98394 6.01850 6.09939 6.24366 6.25356 6.28174 6.38149 6.46913 6.67759 6.80396 6.82622 7.09242 7.15584 7.23787 7.44367 7.56670 7.94999 7.99388 8.01803 8.28453 8.44387 9.28660 9.91065 10.45144 11.03531 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.011104 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.439716 B = 2520.999676 C = 3052.552098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C 0.073 3.927 4 C 0.175 3.825 5 N -0.586 5.586 6 C -0.265 4.265 7 H 0.075 0.925 8 C 0.049 3.951 9 N -0.831 5.831 10 Si 0.822 3.178 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.279 1.279 14 C 0.190 3.810 15 C -0.114 4.114 16 C -0.147 4.147 17 C -0.187 4.187 18 C 0.046 3.954 19 O -0.385 6.385 20 C 0.027 3.973 21 H 0.028 0.972 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.253 0.747 27 H 0.021 0.979 28 H 0.099 0.901 29 H 0.038 0.962 30 H -0.011 1.011 31 H -0.001 1.001 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 7.817 5.719 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.029 3.971 4 C 0.046 3.954 5 N -0.307 5.307 6 C -0.391 4.391 7 H 0.093 0.907 8 C -0.152 4.152 9 N -0.470 5.470 10 Si 0.649 3.351 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.205 1.205 14 C 0.085 3.915 15 C -0.173 4.173 16 C -0.205 4.205 17 C -0.225 4.225 18 C -0.031 4.031 19 O -0.305 6.305 20 C -0.049 4.049 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.438 7.609 5.417 10.341 hybrid contribution -1.062 -0.585 0.028 1.213 sum -5.500 7.023 5.445 10.451 Atomic orbital electron populations 1.22774 0.83607 1.01023 0.99839 1.88267 1.17353 1.24926 1.94044 1.24092 0.98546 0.83700 0.90774 1.20746 0.87430 0.95063 0.92150 1.44219 1.76828 1.03127 1.06526 1.18583 1.45234 0.80645 0.94686 0.90711 1.24892 0.98797 0.96532 0.94972 1.70976 1.32652 1.39457 1.03962 0.87442 0.86890 0.83417 0.77395 1.21551 1.23117 1.20467 1.20163 0.94490 0.90917 0.85945 1.22151 0.94397 1.00832 0.99877 1.22789 0.97116 1.02748 0.97897 1.23598 0.98764 0.99787 1.00389 1.23099 0.98270 0.97978 0.83706 1.88852 1.32350 1.85502 1.23762 1.24319 0.84505 0.97030 0.99087 0.95314 0.93438 0.91177 0.92742 0.92873 0.93656 0.96049 0.88288 0.94344 0.99206 0.98204 0.94631 0.88939 0.90087 0.90133 0.92977 0.90628 0.87457 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.59 101.05 0.97 1.41 16 2 O -0.33 -6.90 9.48 -35.23 -0.33 -7.23 16 3 C 0.07 1.33 1.06 -88.61 -0.09 1.23 16 4 C 0.17 3.39 4.87 -4.04 -0.02 3.37 16 5 N -0.59 -13.56 2.34 -165.66 -0.39 -13.94 16 6 C -0.27 -6.91 7.53 -15.06 -0.11 -7.02 16 7 H 0.08 2.04 8.06 -52.48 -0.42 1.61 16 8 C 0.05 1.30 3.17 -17.43 -0.06 1.25 16 9 N -0.83 -21.84 7.02 55.49 0.39 -21.45 16 10 Si 0.82 20.96 29.55 -169.99 -5.02 15.93 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 13 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.19 4.28 2.76 -67.93 -0.19 4.10 16 15 C -0.11 -2.64 8.20 37.16 0.30 -2.33 16 16 C -0.15 -3.39 7.70 37.16 0.29 -3.10 16 17 C -0.19 -2.67 5.63 -25.20 -0.14 -2.81 16 18 C 0.05 0.64 6.75 37.73 0.25 0.89 16 19 O -0.39 -6.59 9.60 -35.23 -0.34 -6.93 16 20 C 0.03 0.48 5.17 38.21 0.20 0.68 16 21 H 0.03 0.45 6.21 -51.93 -0.32 0.12 16 22 H 0.05 0.88 6.18 -51.93 -0.32 0.55 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.94 7.72 -51.93 -0.40 0.54 16 25 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 26 H 0.25 6.57 8.31 -40.82 -0.34 6.24 16 27 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 28 H 0.10 2.59 5.49 -51.93 -0.28 2.31 16 29 H 0.04 0.88 6.98 -51.93 -0.36 0.52 16 30 H -0.01 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.00 -0.02 6.30 -51.93 -0.33 -0.35 16 32 H 0.03 0.80 7.30 -51.93 -0.38 0.42 16 33 H 0.09 2.41 4.37 -51.93 -0.23 2.18 16 34 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 35 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 38 H 0.11 2.21 5.82 -51.93 -0.30 1.91 16 39 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -27.41 286.16 -6.19 -33.60 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.21 Total: -1.95 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 1.40 Total: -2.34 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.00 Total: -35.40 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.67 Total: -14.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.41 -6.19 -33.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710330043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.417 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds