Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99822 * 2 1 4 4 C 1.52999 * 110.80313 * 182.92784 * 3 2 1 5 5 N 1.46498 * 109.47062 * 55.72293 * 4 3 2 6 6 C 1.36943 * 119.99905 * 274.70424 * 5 4 3 7 7 H 1.08003 * 119.99767 * 333.72240 * 6 5 4 8 8 C 1.38814 * 120.00025 * 153.71829 * 6 5 4 9 9 N 1.31620 * 119.99839 * 49.22717 * 8 6 5 10 10 Si 1.86802 * 119.99942 * 229.22416 * 8 6 5 11 11 H 1.48502 * 109.46961 * 90.00471 * 10 8 6 12 12 H 1.48498 * 109.46781 * 210.00232 * 10 8 6 13 13 H 1.48496 * 109.47236 * 330.00489 * 10 8 6 14 14 C 1.46496 * 120.00360 * 94.70398 * 5 4 3 15 15 C 1.53010 * 109.47059 * 124.51536 * 14 5 4 16 16 C 1.52995 * 109.47545 * 244.51317 * 14 5 4 17 17 C 1.54814 * 110.90755 * 59.30405 * 3 2 1 18 18 C 1.54103 * 104.18505 * 262.64820 * 17 3 2 19 19 O 1.43742 * 107.29547 * 2.02284 * 18 17 3 20 20 C 1.44375 * 106.97514 * 333.49307 * 19 18 17 21 21 H 1.09000 * 109.47146 * 299.99554 * 1 2 3 22 22 H 1.09004 * 109.47655 * 59.99749 * 1 2 3 23 23 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46990 * 175.71479 * 4 3 2 25 25 H 1.08998 * 109.47522 * 295.71859 * 4 3 2 26 26 H 0.96995 * 119.99649 * 179.97438 * 9 8 6 27 27 H 1.08997 * 109.47506 * 4.51710 * 14 5 4 28 28 H 1.08996 * 109.46912 * 22.54812 * 15 14 5 29 29 H 1.08996 * 109.46945 * 142.54706 * 15 14 5 30 30 H 1.09001 * 109.46917 * 262.54561 * 15 14 5 31 31 H 1.09000 * 109.47201 * 90.49389 * 16 14 5 32 32 H 1.09001 * 109.47551 * 210.50274 * 16 14 5 33 33 H 1.09005 * 109.47238 * 330.50289 * 16 14 5 34 34 H 1.08998 * 110.49138 * 143.96982 * 17 3 2 35 35 H 1.08998 * 110.59976 * 21.37388 * 17 3 2 36 36 H 1.09001 * 109.87782 * 242.60203 * 18 17 3 37 37 H 1.08997 * 110.00431 * 121.52281 * 18 17 3 38 38 H 1.09000 * 110.61693 * 158.55869 * 20 19 18 39 39 H 1.08998 * 110.61972 * 281.55080 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5361 1.2209 -0.0731 5 7 3.9261 0.4411 -1.2503 6 6 3.9909 -0.9247 -1.1761 7 1 4.1785 -1.4057 -0.2275 8 6 3.8153 -1.6911 -2.3202 9 7 4.4863 -1.4022 -3.4151 10 14 2.6269 -3.1323 -2.3057 11 1 1.2772 -2.6649 -2.7120 12 1 3.0978 -4.1716 -3.2561 13 1 2.5611 -3.7058 -0.9376 14 6 4.2469 1.1224 -2.5069 15 6 5.6462 0.7097 -2.9681 16 6 3.2225 0.7326 -3.5744 17 6 1.5604 2.1104 1.2436 18 6 0.3911 2.9740 0.7318 19 8 0.1837 2.6369 -0.6500 20 6 1.4473 2.1624 -1.1624 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.9524 2.2255 -0.1485 25 1 3.9166 0.7365 0.8261 26 1 4.3638 -1.9380 -4.2144 27 1 4.2186 2.2011 -2.3530 28 1 5.9096 -0.2473 -2.5177 29 1 5.6579 0.6157 -4.0539 30 1 6.3679 1.4667 -2.6612 31 1 2.3915 1.4377 -3.5552 32 1 3.6949 0.7543 -4.5565 33 1 2.8512 -0.2720 -3.3720 34 1 2.3725 2.7423 1.6033 35 1 1.2220 1.4393 2.0330 36 1 0.6437 4.0305 0.8217 37 1 -0.5104 2.7585 1.3053 38 1 1.2956 1.5506 -2.0517 39 1 2.1119 2.9987 -1.3795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710330043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -42.974322 kcal Electronic energy + Delta-G solvation = -20107.453294 eV Core-core repulsion = 17245.338389 eV Total energy + Delta-G solvation = -2862.114905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24510 -38.48701 -37.21344 -34.07760 -32.78129 -31.69027 -30.07927 -27.58474 -27.25156 -26.85798 -24.57417 -23.20023 -21.58070 -21.14850 -18.23769 -18.06302 -17.18447 -16.60749 -16.42693 -16.13334 -15.60420 -15.16182 -15.00956 -14.83068 -14.36805 -14.01497 -13.69510 -13.47503 -13.30368 -13.10224 -12.79275 -12.66591 -12.54579 -12.33477 -12.25505 -12.13750 -11.89901 -11.49251 -11.40676 -11.36314 -10.98148 -10.84406 -9.98794 -9.54429 -8.60179 -7.96498 -4.92231 1.44619 1.55344 1.62379 2.60929 2.95186 3.07178 3.14802 3.58256 3.86468 3.90796 4.13311 4.22680 4.37488 4.48346 4.50974 4.59019 4.74590 4.79233 4.80472 4.84989 4.91727 4.93505 5.01510 5.08923 5.15592 5.22841 5.30882 5.40904 5.60891 5.70765 5.90202 5.92754 6.10590 6.32475 6.47348 6.60360 7.32917 8.01514 8.49577 8.99782 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.011104 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.439716 B = 2520.999676 C = 3052.552098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.066 3.934 4 C 0.170 3.830 5 N -0.596 5.596 6 C -0.254 4.254 7 H 0.058 0.942 8 C 0.026 3.974 9 N -0.836 5.836 10 Si 0.849 3.151 11 H -0.303 1.303 12 H -0.309 1.309 13 H -0.287 1.287 14 C 0.190 3.810 15 C -0.104 4.104 16 C -0.137 4.137 17 C -0.176 4.176 18 C 0.043 3.957 19 O -0.400 6.400 20 C 0.035 3.965 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.248 0.752 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.009 0.991 31 H 0.012 0.988 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 9.980 7.042 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.285 6.285 3 C 0.023 3.977 4 C 0.043 3.957 5 N -0.317 5.317 6 C -0.381 4.381 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.477 5.477 10 Si 0.679 3.321 11 H -0.231 1.231 12 H -0.238 1.238 13 H -0.212 1.212 14 C 0.084 3.916 15 C -0.163 4.163 16 C -0.196 4.196 17 C -0.214 4.214 18 C -0.034 4.034 19 O -0.320 6.320 20 C -0.042 4.042 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.738 9.789 6.767 12.809 hybrid contribution -0.997 -1.211 -0.309 1.599 sum -5.735 8.578 6.458 12.173 Atomic orbital electron populations 1.22787 0.82361 1.01233 1.00472 1.88193 1.18875 1.26989 1.94405 1.24036 0.97355 0.83253 0.93025 1.20948 0.88497 0.95890 0.90404 1.44290 1.77235 1.02375 1.07800 1.18508 1.43692 0.82319 0.93625 0.92373 1.25060 0.99867 0.97116 0.95399 1.71030 1.33141 1.39665 1.03823 0.86984 0.86139 0.82567 0.76445 1.23149 1.23802 1.21241 1.20196 0.93705 0.92178 0.85515 1.21985 0.95395 0.99737 0.99142 1.22623 0.97672 1.01272 0.97985 1.23531 0.99791 0.99606 0.98486 1.23333 0.98869 0.99158 0.81998 1.88838 1.31890 1.85587 1.25678 1.24098 0.85196 0.96938 0.97944 0.92806 0.94504 0.91313 0.89858 0.93192 0.94147 0.93431 0.91499 0.95060 0.97169 0.96880 0.95002 0.92015 0.87650 0.89702 0.90610 0.88953 0.90643 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.59 113.37 1.09 2.06 16 2 O -0.37 -15.02 9.48 -148.98 -1.41 -16.44 16 3 C 0.07 2.26 1.06 -9.49 -0.01 2.24 16 4 C 0.17 6.16 4.87 86.38 0.42 6.58 16 5 N -0.60 -26.81 2.34 -678.03 -1.58 -28.39 16 6 C -0.25 -13.23 7.53 84.03 0.63 -12.59 16 7 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 8 C 0.03 1.37 3.17 84.86 0.27 1.64 16 9 N -0.84 -44.44 7.02 21.65 0.15 -44.29 16 10 Si 0.85 43.88 29.55 68.60 2.03 45.91 16 11 H -0.30 -16.21 7.11 99.48 0.71 -15.51 16 12 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 13 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 14 C 0.19 8.21 2.76 44.99 0.12 8.33 16 15 C -0.10 -4.68 8.20 71.99 0.59 -4.09 16 16 C -0.14 -6.22 7.70 71.98 0.55 -5.66 16 17 C -0.18 -4.34 5.63 31.59 0.18 -4.16 16 18 C 0.04 0.99 6.75 72.36 0.49 1.48 16 19 O -0.40 -12.60 9.60 -148.98 -1.43 -14.03 16 20 C 0.03 1.18 5.17 72.66 0.38 1.55 16 21 H 0.05 1.55 6.21 -2.39 -0.01 1.53 16 22 H 0.04 1.33 6.18 -2.39 -0.01 1.32 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.08 2.53 7.72 -2.38 -0.02 2.51 16 25 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 26 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 27 H 0.05 1.82 7.71 -2.39 -0.02 1.80 16 28 H 0.07 3.47 5.49 -2.39 -0.01 3.46 16 29 H 0.03 1.40 6.98 -2.39 -0.02 1.39 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.01 0.53 6.30 -2.39 -0.02 0.51 16 32 H 0.03 1.42 7.30 -2.39 -0.02 1.40 16 33 H 0.06 3.23 4.37 -2.38 -0.01 3.22 16 34 H 0.11 2.10 7.86 -2.39 -0.02 2.08 16 35 H 0.08 2.05 7.61 -2.39 -0.02 2.03 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.85 7.98 -2.39 -0.02 1.84 16 38 H 0.08 3.05 5.82 -2.39 -0.01 3.04 16 39 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 Total: -1.00 -58.72 286.16 3.49 -55.24 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.02 Total: 4.61 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.71 Total: -2.61 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.43 Total: -72.68 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -2.84 Total: -30.47 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.72 3.49 -55.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710330043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.264 kcal (2) G-P(sol) polarization free energy of solvation -58.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds