Wall clock time and date at job start Mon Mar 30 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.98921 * 2 1 4 4 C 1.38441 * 119.97237 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.01799 * 179.97438 * 4 3 2 6 6 C 1.38473 * 119.95224 * 0.02562 * 4 3 2 7 7 C 1.38181 * 119.97591 * 359.74807 * 6 4 3 8 8 C 1.38226 * 119.98585 * 179.97438 * 2 1 3 9 9 S 1.76206 * 119.97635 * 359.97438 * 8 2 1 10 10 O 1.42099 * 106.40297 * 181.46317 * 9 8 2 11 11 O 1.42096 * 106.40129 * 48.53884 * 9 8 2 12 12 C 1.76198 * 107.21521 * 295.00263 * 9 8 2 13 13 H 1.08004 * 120.00524 * 0.27575 * 12 9 8 14 14 C 1.37885 * 119.99742 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46793 * 120.00131 * 16 14 12 19 19 H 1.48500 * 109.47000 * 240.00224 * 16 14 12 20 20 H 1.08999 * 109.46853 * 270.01675 * 1 2 3 21 21 H 1.09000 * 109.46896 * 30.02475 * 1 2 3 22 22 H 1.09009 * 109.46909 * 150.01998 * 1 2 3 23 23 H 1.07997 * 120.01041 * 359.95696 * 3 2 1 24 24 H 1.07996 * 120.01431 * 180.02562 * 6 4 3 25 25 H 1.07994 * 119.98992 * 180.24839 * 7 6 4 26 26 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1967 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0033 0.0005 7 6 3.5806 -1.1989 0.0053 8 6 2.1979 -1.1972 0.0005 9 16 1.3158 -2.7226 0.0019 10 8 2.2947 -3.7521 0.0370 11 8 0.3333 -2.6189 -1.0193 12 6 0.4396 -2.8170 1.5276 13 1 0.5134 -2.0117 2.2436 14 6 -0.3455 -3.9161 1.8049 15 7 -0.4398 -4.8942 0.9308 16 14 -1.2739 -4.0165 3.4228 17 1 -1.0018 -2.7976 4.2261 18 1 -2.7307 -4.1153 3.1521 19 1 -0.8278 -5.2161 4.1759 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6579 2.1324 -0.0007 24 1 5.3533 -0.0048 0.0014 25 1 4.1192 -2.1349 0.0093 26 1 -0.9918 -5.6675 1.1261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020223233.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:36 Heat of formation + Delta-G solvation = -114.286078 kcal Electronic energy + Delta-G solvation = -15542.045331 eV Core-core repulsion = 12626.745830 eV Total energy + Delta-G solvation = -2915.299500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.88513 -38.81786 -35.47482 -34.08292 -33.18478 -32.42650 -30.46380 -26.78581 -26.16867 -22.83445 -21.59549 -18.82502 -17.53334 -16.96132 -16.43171 -16.21445 -15.56096 -15.07882 -14.11774 -14.04777 -13.98195 -13.26366 -13.09667 -13.00300 -12.67531 -12.11288 -11.74992 -11.55408 -11.27781 -11.19626 -10.88046 -10.62647 -10.37730 -10.11380 -9.59790 -9.32588 -8.95421 -8.74836 -8.56034 -6.79040 -5.41653 1.04978 1.44155 2.04834 3.02007 3.10962 3.17784 3.60997 4.01654 4.30030 4.56592 4.84005 5.00854 5.26929 5.33919 5.40674 5.76505 5.84560 5.89132 6.05577 6.16273 6.20412 6.32291 6.45757 6.82851 6.92453 7.09976 7.23316 7.87186 8.79163 10.15902 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.034925 B = 0.008223 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.514885 B = 3404.106217 C = 3625.398474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.048 3.952 3 C -0.186 4.186 4 C 0.133 3.867 5 F -0.142 7.142 6 C -0.189 4.189 7 C 0.001 3.999 8 C -0.662 4.662 9 S 2.607 3.393 10 O -0.985 6.985 11 O -0.979 6.979 12 C -0.998 4.998 13 H 0.106 0.894 14 C 0.133 3.867 15 N -0.841 5.841 16 Si 0.923 3.077 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.123 0.877 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.151 0.849 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 8.693 0.706 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 C -0.206 4.206 4 C 0.114 3.886 5 F -0.120 7.120 6 C -0.209 4.209 7 C -0.018 4.018 8 C -0.742 4.742 9 S 2.788 3.212 10 O -0.982 6.982 11 O -0.976 6.976 12 C -1.131 5.131 13 H 0.125 0.875 14 C -0.085 4.085 15 N -0.470 5.470 16 Si 0.747 3.253 17 H -0.185 1.185 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.109 0.891 21 H 0.090 0.910 22 H 0.141 0.859 23 H 0.155 0.845 24 H 0.155 0.845 25 H 0.169 0.831 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.297 8.039 -0.065 8.689 hybrid contribution -0.086 0.923 1.386 1.667 sum 3.211 8.962 1.321 9.611 Atomic orbital electron populations 1.21688 0.89447 1.06774 1.04810 1.19503 0.96678 0.90627 0.88502 1.21092 0.92151 0.99491 1.07831 1.17860 0.90297 0.81045 0.99402 1.91480 1.80425 1.46484 1.93630 1.21159 1.00751 0.91334 1.07650 1.20908 0.92476 0.98479 0.89900 1.31565 1.06028 1.22108 1.14538 1.01045 0.73231 0.70162 0.76797 1.93321 1.62911 1.53011 1.88963 1.93285 1.59060 1.85146 1.60096 1.30088 1.44308 1.13752 1.24990 0.87535 1.24758 0.92941 0.92556 0.98265 1.69901 1.34661 1.07611 1.34853 0.86080 0.79087 0.79299 0.80860 1.18490 1.19487 1.19518 0.89063 0.90981 0.85887 0.84534 0.84505 0.83107 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.02 36.01 0.32 -2.67 15 2 C 0.05 0.89 5.87 -104.63 -0.61 0.28 15 3 C -0.19 -3.00 9.68 -39.51 -0.38 -3.39 15 4 C 0.13 2.12 7.30 -39.42 -0.29 1.83 15 5 F -0.14 -2.10 17.27 2.25 0.04 -2.06 15 6 C -0.19 -3.00 10.03 -39.52 -0.40 -3.40 15 7 C 0.00 0.02 9.55 -39.59 -0.38 -0.36 15 8 C -0.66 -13.80 5.75 -39.57 -0.23 -14.03 15 9 S 2.61 66.43 4.06 -107.50 -0.44 65.99 15 10 O -0.98 -27.44 16.85 -57.17 -0.96 -28.40 15 11 O -0.98 -26.65 15.25 -57.17 -0.87 -27.52 15 12 C -1.00 -25.79 8.99 30.60 0.28 -25.51 15 13 H 0.11 2.51 7.81 -52.48 -0.41 2.10 15 14 C 0.13 3.50 5.46 -17.82 -0.10 3.40 15 15 N -0.84 -23.43 13.19 55.43 0.73 -22.70 15 16 Si 0.92 19.49 29.54 -169.99 -5.02 14.46 15 17 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 20 H 0.09 1.49 8.14 -51.93 -0.42 1.06 15 21 H 0.07 1.01 8.09 -51.93 -0.42 0.59 15 22 H 0.12 2.53 4.84 -51.92 -0.25 2.28 15 23 H 0.14 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.14 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.15 2.63 7.33 -52.49 -0.38 2.25 15 26 H 0.29 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 249.75 15.07 3.76 3.76 Total: -1.00 -31.15 249.75 -6.41 -37.56 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -1.87 Total: 2.75 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: -1.78 Total: -43.85 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.73 Total: -22.70 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.84 Total: -55.92 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 66.43 SS G_CDS: -0.44 Total: 65.99 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.15 -6.41 -37.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223233.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.723 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds