Wall clock time and date at job start Mon Mar 30 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.98921 * 2 1 4 4 C 1.38441 * 119.97237 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.01799 * 179.97438 * 4 3 2 6 6 C 1.38473 * 119.95224 * 0.02562 * 4 3 2 7 7 C 1.38181 * 119.97591 * 359.74807 * 6 4 3 8 8 C 1.38226 * 119.98585 * 179.97438 * 2 1 3 9 9 S 1.76206 * 119.97635 * 359.97438 * 8 2 1 10 10 O 1.42099 * 106.40297 * 181.46317 * 9 8 2 11 11 O 1.42096 * 106.40129 * 48.53884 * 9 8 2 12 12 C 1.76198 * 107.21521 * 295.00263 * 9 8 2 13 13 H 1.08004 * 120.00524 * 0.27575 * 12 9 8 14 14 C 1.37885 * 119.99742 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46793 * 120.00131 * 16 14 12 19 19 H 1.48500 * 109.47000 * 240.00224 * 16 14 12 20 20 H 1.08999 * 109.46853 * 270.01675 * 1 2 3 21 21 H 1.09000 * 109.46896 * 30.02475 * 1 2 3 22 22 H 1.09009 * 109.46909 * 150.01998 * 1 2 3 23 23 H 1.07997 * 120.01041 * 359.95696 * 3 2 1 24 24 H 1.07996 * 120.01431 * 180.02562 * 6 4 3 25 25 H 1.07994 * 119.98992 * 180.24839 * 7 6 4 26 26 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1967 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0033 0.0005 7 6 3.5806 -1.1989 0.0053 8 6 2.1979 -1.1972 0.0005 9 16 1.3158 -2.7226 0.0019 10 8 2.2947 -3.7521 0.0370 11 8 0.3333 -2.6189 -1.0193 12 6 0.4396 -2.8170 1.5276 13 1 0.5134 -2.0117 2.2436 14 6 -0.3455 -3.9161 1.8049 15 7 -0.4398 -4.8942 0.9308 16 14 -1.2739 -4.0165 3.4228 17 1 -1.0018 -2.7976 4.2261 18 1 -2.7307 -4.1153 3.1521 19 1 -0.8278 -5.2161 4.1759 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6579 2.1324 -0.0007 24 1 5.3533 -0.0048 0.0014 25 1 4.1192 -2.1349 0.0093 26 1 -0.9918 -5.6675 1.1261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223233.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:35 Heat of formation + Delta-G solvation = -136.034724 kcal Electronic energy + Delta-G solvation = -15542.988423 eV Core-core repulsion = 12626.745830 eV Total energy + Delta-G solvation = -2916.242592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.10814 -40.19515 -37.49448 -36.13150 -35.16854 -33.81049 -31.85458 -28.35597 -27.97237 -24.25155 -22.96760 -20.74405 -19.26241 -18.35518 -18.14068 -17.69117 -16.94573 -16.78296 -15.90446 -15.78628 -15.48983 -14.66870 -14.52960 -14.37831 -14.13654 -13.95345 -13.28092 -13.18449 -12.98264 -12.87474 -12.46408 -12.24019 -12.18628 -12.06463 -11.34736 -11.22799 -10.85696 -10.16427 -9.93559 -8.74112 -7.46487 -0.37157 0.10976 0.16670 1.37877 1.39518 1.56850 2.19910 2.28506 2.61357 2.99752 3.40279 3.51409 3.71878 3.78847 4.01478 4.13915 4.53522 4.54892 4.68675 4.75230 4.83714 4.92432 5.03601 5.25663 5.30286 5.45642 5.76011 5.91059 6.79028 8.23813 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.034925 B = 0.008223 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.514885 B = 3404.106217 C = 3625.398474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.036 3.964 3 C -0.176 4.176 4 C 0.143 3.857 5 F -0.129 7.129 6 C -0.178 4.178 7 C -0.014 4.014 8 C -0.680 4.680 9 S 2.597 3.403 10 O -1.026 7.026 11 O -1.013 7.013 12 C -1.011 5.011 13 H 0.124 0.876 14 C 0.073 3.927 15 N -0.890 5.890 16 Si 0.991 3.009 17 H -0.245 1.245 18 H -0.258 1.258 19 H -0.262 1.262 20 H 0.100 0.900 21 H 0.109 0.891 22 H 0.087 0.913 23 H 0.173 0.827 24 H 0.173 0.827 25 H 0.150 0.850 26 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 11.254 2.086 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 C -0.195 4.195 4 C 0.123 3.877 5 F -0.107 7.107 6 C -0.197 4.197 7 C -0.032 4.032 8 C -0.767 4.767 9 S 2.786 3.214 10 O -1.024 7.024 11 O -1.010 7.010 12 C -1.144 5.144 13 H 0.142 0.858 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.809 3.191 17 H -0.168 1.168 18 H -0.182 1.182 19 H -0.187 1.187 20 H 0.119 0.881 21 H 0.128 0.872 22 H 0.106 0.894 23 H 0.191 0.809 24 H 0.190 0.810 25 H 0.168 0.832 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.618 10.555 1.298 11.233 hybrid contribution -0.079 0.275 0.899 0.943 sum 3.539 10.830 2.197 11.603 Atomic orbital electron populations 1.21701 0.89097 1.06847 1.05453 1.19662 0.97207 0.90719 0.88902 1.21368 0.92445 0.99737 1.05992 1.17917 0.90390 0.81369 0.97994 1.91523 1.80157 1.45746 1.93314 1.21436 1.02487 0.90122 1.05659 1.21017 0.91674 0.99887 0.90659 1.30804 1.06866 1.20341 1.18688 1.00635 0.72901 0.71255 0.76651 1.93258 1.63629 1.56156 1.89321 1.93245 1.60322 1.86336 1.61111 1.30393 1.44263 1.14414 1.25376 0.85823 1.25991 0.93777 0.91936 1.02262 1.69999 1.36107 1.08716 1.37324 0.85077 0.78005 0.80084 0.75890 1.16830 1.18179 1.18676 0.88129 0.87248 0.89408 0.80934 0.80956 0.83197 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.92 9.02 71.24 0.64 -5.28 15 2 C 0.04 1.29 5.87 -19.87 -0.12 1.17 15 3 C -0.18 -5.02 9.68 22.31 0.22 -4.81 15 4 C 0.14 3.97 7.30 22.37 0.16 4.14 15 5 F -0.13 -3.23 17.27 44.97 0.78 -2.45 15 6 C -0.18 -5.08 10.03 22.31 0.22 -4.86 15 7 C -0.01 -0.49 9.55 22.26 0.21 -0.28 15 8 C -0.68 -28.38 5.75 22.27 0.13 -28.25 15 9 S 2.60 137.63 4.06 -56.49 -0.23 137.41 15 10 O -1.03 -60.15 16.85 -128.00 -2.16 -62.30 15 11 O -1.01 -58.05 15.25 -128.00 -1.95 -60.00 15 12 C -1.01 -53.15 8.99 67.74 0.61 -52.54 15 13 H 0.12 5.82 7.81 -2.91 -0.02 5.79 15 14 C 0.07 3.90 5.46 84.66 0.46 4.37 15 15 N -0.89 -51.27 13.19 21.45 0.28 -50.98 15 16 Si 0.99 39.38 29.54 68.60 2.03 41.41 15 17 H -0.25 -9.02 7.11 99.48 0.71 -8.31 15 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 20 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 21 H 0.11 2.77 8.09 -2.39 -0.02 2.75 15 22 H 0.09 3.68 4.84 -2.38 -0.01 3.67 15 23 H 0.17 3.62 8.06 -2.91 -0.02 3.60 15 24 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 25 H 0.15 5.31 7.33 -2.91 -0.02 5.29 15 26 H 0.30 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -69.79 249.75 2.50 -67.29 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.21 Total: 15.97 kcal Atomic # 6 Polarization: -88.87 SS G_CDS: 2.54 Total: -86.33 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.28 Total: -50.98 kcal Atomic # 8 Polarization: -118.19 SS G_CDS: -4.11 Total: -122.30 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 137.63 SS G_CDS: -0.23 Total: 137.41 kcal Total: -69.79 2.50 -67.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223233.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.747 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds