Wall clock time and date at job start Mon Mar 30 2020 04:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47481 * 222.48405 * 3 2 1 5 5 C 1.36825 * 119.99686 * 263.62784 * 4 3 2 6 6 H 1.08002 * 119.99652 * 197.78703 * 5 4 3 7 7 C 1.38780 * 120.00158 * 17.79027 * 5 4 3 8 8 N 1.31604 * 119.99822 * 17.83385 * 7 5 4 9 9 Si 1.86801 * 119.99800 * 197.82892 * 7 5 4 10 10 H 1.48498 * 109.47032 * 94.89602 * 9 7 5 11 11 H 1.48495 * 109.47269 * 214.89471 * 9 7 5 12 12 H 1.48495 * 109.47469 * 334.89782 * 9 7 5 13 13 C 1.39475 * 119.99735 * 83.34868 * 4 3 2 14 14 N 1.30926 * 124.02133 * 174.47051 * 13 4 3 15 15 S 1.55967 * 108.41919 * 179.86567 * 14 13 4 16 16 N 1.55950 * 98.92352 * 0.36038 * 15 14 13 17 17 C 1.30336 * 108.59064 * 359.79147 * 16 15 14 18 18 Cl 1.73608 * 123.94233 * 179.97438 * 17 16 15 19 19 H 1.08995 * 109.47360 * 102.48055 * 3 2 1 20 20 H 1.09003 * 109.47165 * 342.48639 * 3 2 1 21 21 H 0.97001 * 119.99697 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.0195 0.9328 5 6 3.4474 2.2583 0.4703 6 1 4.0644 2.9057 1.0759 7 6 3.0112 2.6829 -0.7768 8 7 1.9993 2.0774 -1.3612 9 14 3.8602 4.1138 -1.6259 10 1 4.8953 3.5943 -2.5554 11 1 2.8591 4.9007 -2.3899 12 1 4.5013 4.9840 -0.6076 13 6 3.1966 0.7284 2.2932 14 7 3.7179 1.5393 3.1791 15 16 3.6422 0.8547 4.5785 16 7 2.9678 -0.4863 4.1556 17 6 2.7609 -0.4597 2.8690 18 17 2.0274 -1.7568 1.9781 19 1 2.9712 0.2229 -1.0033 20 1 2.9718 -0.9792 0.3093 21 1 1.6946 2.3739 -2.2331 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037371953.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:01 Heat of formation + Delta-G solvation = 96.733287 kcal Electronic energy + Delta-G solvation = -13330.595758 eV Core-core repulsion = 10781.535527 eV Total energy + Delta-G solvation = -2549.060231 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 243.988 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65777 -38.45517 -37.82397 -36.46553 -34.24111 -33.23117 -29.35735 -27.70773 -25.13346 -22.05734 -20.63130 -19.02407 -18.68336 -18.03200 -16.85615 -16.66293 -16.03119 -15.65250 -15.15531 -14.14275 -13.62581 -13.47370 -13.35345 -12.99659 -12.84307 -12.54240 -12.38779 -12.17783 -12.08770 -11.99404 -11.57471 -11.25664 -10.99437 -10.42059 -8.86006 -8.36554 -5.81792 -0.16724 0.01749 0.89418 1.21997 1.52028 1.58301 1.62985 1.75350 2.02136 2.27047 2.37023 2.98271 3.09700 3.51508 3.69934 4.43289 4.48527 4.84064 5.47048 5.52748 5.87304 6.61500 7.00558 7.14086 7.46835 8.64186 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.011265 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.591949 B = 2484.955379 C = 3373.720619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.261 3.739 3 C 0.227 3.773 4 N -0.417 5.417 5 C -0.307 4.307 6 H 0.100 0.900 7 C -0.006 4.006 8 N -0.899 5.899 9 Si 0.998 3.002 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.270 1.270 13 C 0.308 3.692 14 N -0.685 5.685 15 S 0.728 5.272 16 N -0.568 5.568 17 C 0.040 3.960 18 Cl 0.018 6.982 19 H 0.133 0.867 20 H 0.121 0.879 21 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -4.006 4.565 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.057 4.057 3 C 0.100 3.900 4 N -0.121 5.121 5 C -0.436 4.436 6 H 0.118 0.882 7 C -0.208 4.208 8 N -0.537 5.537 9 Si 0.822 3.178 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.195 1.195 13 C 0.046 3.954 14 N -0.543 5.543 15 S 0.767 5.233 16 N -0.414 5.414 17 C -0.171 4.171 18 Cl 0.045 6.955 19 H 0.150 0.850 20 H 0.138 0.862 21 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.556 -3.406 6.025 8.286 hybrid contribution -0.259 0.073 -2.277 2.293 sum 4.297 -3.333 3.748 6.604 Atomic orbital electron populations 1.80856 1.14481 1.11893 1.11277 1.29635 0.95722 0.89837 0.90530 1.19494 0.80647 0.92556 0.97314 1.42139 1.59255 1.12566 0.98176 1.19868 1.28954 0.92986 1.01829 0.88182 1.26021 0.95480 1.01436 0.97861 1.70030 1.22794 1.43516 1.17378 0.84817 0.77672 0.77278 0.78043 1.18792 1.21605 1.19484 1.19080 0.98441 0.89421 0.88441 1.71918 1.38257 1.36701 1.07451 1.77944 1.42594 0.92392 1.10330 1.71316 1.21794 1.32156 1.16114 1.21872 1.11610 0.94608 0.89047 1.98327 1.80354 1.46432 1.70338 0.84973 0.86205 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.48 18.54 20.01 0.37 -24.11 14 2 C 0.26 11.80 11.36 89.44 1.02 12.82 14 3 C 0.23 9.30 4.75 84.57 0.40 9.70 14 4 N -0.42 -19.13 2.71 -577.06 -1.57 -20.69 14 5 C -0.31 -14.93 9.48 84.04 0.80 -14.14 14 6 H 0.10 5.03 7.49 -2.91 -0.02 5.01 14 7 C -0.01 -0.27 4.96 84.86 0.42 0.15 14 8 N -0.90 -43.89 9.29 21.64 0.20 -43.69 14 9 Si 1.00 38.36 29.59 68.60 2.03 40.39 14 10 H -0.26 -9.55 7.11 99.48 0.71 -8.84 14 11 H -0.29 -11.37 7.11 99.48 0.71 -10.67 14 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 14 13 C 0.31 13.42 7.26 133.31 0.97 14.39 14 14 N -0.69 -28.62 10.68 -89.41 -0.96 -29.58 14 15 S 0.73 23.27 23.69 -56.49 -1.34 21.93 14 16 N -0.57 -20.55 11.43 -83.75 -0.96 -21.51 14 17 C 0.04 1.57 7.40 85.11 0.63 2.20 14 18 Cl 0.02 0.64 23.16 -2.72 -0.06 0.58 14 19 H 0.13 5.46 6.30 -2.39 -0.02 5.44 14 20 H 0.12 4.16 5.25 -2.39 -0.01 4.14 14 21 H 0.28 12.98 8.31 -92.71 -0.77 12.21 14 Total: -1.00 -57.19 222.97 3.25 -53.93 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 1.30 Total: -2.39 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 4.23 Total: 25.12 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -2.91 Total: -139.57 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 23.27 SS G_CDS: -1.34 Total: 21.93 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -0.06 Total: 0.58 kcal Total: -57.19 3.25 -53.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037371953.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.667 kcal (2) G-P(sol) polarization free energy of solvation -57.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds