Wall clock time and date at job start Mon Mar 30 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30394 * 125.98115 * 2 1 4 4 N 1.39931 * 108.98551 * 180.12537 * 3 2 1 5 5 C 1.46491 * 125.73980 * 179.81147 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.69034 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.34312 * 108.51590 * 359.54654 * 4 3 2 15 15 Cl 1.73599 * 126.32254 * 180.26251 * 14 4 3 16 16 C 1.38355 * 107.35695 * 0.26437 * 14 4 3 17 17 C 1.47151 * 126.45174 * 180.02562 * 16 14 4 18 18 O 1.21547 * 119.99972 * 89.97475 * 17 16 14 19 19 O 1.34773 * 120.00269 * 269.97864 * 17 16 14 20 20 H 1.08997 * 109.47264 * 270.37489 * 1 2 3 21 21 H 1.09002 * 109.47115 * 30.37204 * 1 2 3 22 22 H 1.09003 * 109.47481 * 150.37020 * 1 2 3 23 23 H 1.09004 * 109.47166 * 149.69300 * 5 4 3 24 24 H 1.08994 * 109.47507 * 29.69006 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 0.96704 * 116.99990 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2730 1.0552 0.0000 4 7 3.6112 0.6461 -0.0029 5 6 4.7770 1.5331 -0.0077 6 6 5.1775 1.8285 -1.4302 7 1 4.6192 1.3989 -2.2488 8 6 6.2530 2.6524 -1.6867 9 7 6.9327 3.1759 -0.6899 10 14 6.7447 3.0247 -3.4499 11 1 5.8265 2.3190 -4.3794 12 1 6.6614 4.4881 -3.6885 13 1 8.1368 2.5635 -3.6836 14 6 3.6468 -0.6965 0.0054 15 17 5.0723 -1.6872 0.0122 16 6 2.3377 -1.1441 0.0075 17 6 1.8934 -2.5469 0.0164 18 8 1.7097 -3.1195 1.0727 19 8 1.6903 -3.1970 -1.1466 20 1 -0.3633 0.0067 1.0276 21 1 -0.3633 0.8866 -0.5196 22 1 -0.3634 -0.8933 -0.5081 23 1 5.6048 1.0480 0.5095 24 1 4.5271 2.4646 0.5002 25 1 7.6895 3.7552 -0.8704 26 1 1.3991 -4.1174 -1.0901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037469790.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:38 Heat of formation + Delta-G solvation = -53.429253 kcal Electronic energy + Delta-G solvation = -15190.426792 eV Core-core repulsion = 12295.642497 eV Total energy + Delta-G solvation = -2894.784295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53676 -40.74945 -38.07297 -37.01513 -36.02328 -34.25835 -31.69616 -30.73102 -28.19840 -25.80441 -23.94602 -22.01068 -21.11509 -19.26363 -18.87415 -18.41974 -17.19744 -16.69879 -16.51353 -16.18328 -15.30271 -14.66647 -14.50435 -14.31769 -13.96037 -13.68784 -13.30106 -13.18466 -12.85743 -12.79830 -12.68523 -12.55973 -12.34178 -12.00954 -11.79482 -11.57044 -10.77229 -10.31473 -9.80796 -8.39138 -6.55399 0.23678 0.43774 0.97826 1.23299 1.37700 1.39083 1.48926 1.58347 2.27059 2.33983 2.94007 3.48465 3.80649 4.12047 4.44748 4.59408 4.74770 4.77295 4.79193 5.06124 5.38961 5.44985 5.49129 5.66832 5.69202 6.46287 6.54676 6.99529 7.15589 8.69632 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.007334 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.341028 B = 3817.127916 C = 4138.128649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.111 3.889 3 N -0.302 5.302 4 N -0.322 5.322 5 C 0.263 3.737 6 C -0.554 4.554 7 H 0.056 0.944 8 C 0.026 3.974 9 N -0.916 5.916 10 Si 0.972 3.028 11 H -0.270 1.270 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.165 3.835 15 Cl 0.017 6.983 16 C -0.288 4.288 17 C 0.590 3.410 18 O -0.527 6.527 19 O -0.498 6.498 20 H 0.099 0.901 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.275 0.725 26 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 -9.937 -1.035 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 N -0.126 5.126 4 N -0.100 5.100 5 C 0.145 3.855 6 C -0.592 4.592 7 H 0.074 0.926 8 C -0.175 4.175 9 N -0.554 5.554 10 Si 0.796 3.204 11 H -0.194 1.194 12 H -0.198 1.198 13 H -0.195 1.195 14 C 0.004 3.996 15 Cl 0.046 6.954 16 C -0.304 4.304 17 C 0.432 3.568 18 O -0.416 6.416 19 O -0.311 6.311 20 H 0.117 0.883 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -8.419 -8.271 -0.723 11.824 hybrid contribution 0.783 -1.053 -0.531 1.416 sum -7.636 -9.323 -1.254 12.116 Atomic orbital electron populations 1.20448 0.82348 1.05193 1.04931 1.22959 0.98811 0.87135 0.96578 1.77257 0.85810 1.23119 1.26364 1.49246 1.07088 1.03276 1.50414 1.19600 0.78383 0.88579 0.98947 1.21359 1.15090 1.31705 0.91068 0.92622 1.25710 0.95164 0.94317 1.02341 1.70002 1.20184 1.32042 1.33132 0.85287 0.78384 0.78316 0.78426 1.19437 1.19787 1.19491 1.22133 0.89837 0.85036 1.02638 1.98393 1.35840 1.64616 1.96587 1.18860 0.90444 0.92944 1.28105 1.19262 0.71776 0.84660 0.81152 1.90871 1.48768 1.68419 1.33545 1.84680 1.79479 1.33274 1.33658 0.88284 0.88821 0.88568 0.92934 0.94024 0.91589 0.70452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.28 71.23 0.73 -0.94 15 2 C 0.11 3.94 7.27 43.55 0.32 4.26 15 3 N -0.30 -13.05 12.49 -46.64 -0.58 -13.63 15 4 N -0.32 -14.89 3.56 -339.74 -1.21 -16.10 15 5 C 0.26 13.44 6.00 85.64 0.51 13.96 15 6 C -0.55 -30.04 9.39 25.60 0.24 -29.80 15 7 H 0.06 3.09 7.81 -2.91 -0.02 3.07 15 8 C 0.03 1.40 5.46 84.66 0.46 1.86 15 9 N -0.92 -50.62 13.29 21.45 0.28 -50.34 15 10 Si 0.97 42.00 29.54 68.60 2.03 44.03 15 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 13 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 14 C 0.16 6.82 7.54 84.34 0.64 7.46 15 15 Cl 0.02 0.64 28.56 -2.72 -0.08 0.57 15 16 C -0.29 -10.62 6.01 -20.13 -0.12 -10.74 15 17 C 0.59 18.23 7.72 70.16 0.54 18.77 15 18 O -0.53 -17.99 17.90 19.68 0.35 -17.63 15 19 O -0.50 -11.42 13.44 -56.85 -0.76 -12.19 15 20 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.10 1.84 8.01 -2.39 -0.02 1.83 15 23 H 0.05 2.72 7.77 -2.38 -0.02 2.71 15 24 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.27 14.15 8.31 -92.70 -0.77 13.38 15 26 H 0.43 4.76 9.11 -74.05 -0.67 4.08 15 Total: -1.00 -65.16 265.18 3.91 -61.25 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 0.56 Total: -0.78 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 3.32 Total: 4.83 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.51 Total: -80.07 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.41 Total: -29.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -0.08 Total: 0.57 kcal Total: -65.16 3.91 -61.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469790.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.823 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds