Wall clock time and date at job start Mon Mar 30 2020 03:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.47408 * 60.00073 * 14 13 12 16 16 O 1.42906 * 109.47257 * 300.00098 * 14 13 12 17 17 C 1.53004 * 109.47360 * 180.02562 * 14 13 12 18 18 O 1.42895 * 109.47510 * 184.99941 * 17 14 13 19 19 C 1.42897 * 114.00173 * 179.97438 * 18 17 14 20 20 C 1.53004 * 109.46981 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.49886 * 243.74395 * 20 19 18 22 22 C 1.53007 * 117.49537 * 175.08554 * 20 19 18 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 26 26 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 30 30 H 0.96709 * 113.99630 * 299.99873 * 16 14 13 31 31 H 1.09001 * 109.46559 * 305.00226 * 17 14 13 32 32 H 1.08997 * 109.47028 * 64.99590 * 17 14 13 33 33 H 1.08997 * 109.47380 * 299.99905 * 19 18 17 34 34 H 1.09000 * 109.47081 * 60.00021 * 19 18 17 35 35 H 1.08998 * 115.55141 * 29.42500 * 20 19 18 36 36 H 1.09002 * 117.50339 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49845 * 145.02477 * 21 20 19 38 38 H 1.08995 * 117.49926 * 214.97826 * 22 20 19 39 39 H 1.09001 * 117.49876 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 1.9183 -1.3563 -3.8030 16 8 3.8999 -1.0496 -3.3052 17 6 2.6610 0.4203 -4.7694 18 8 3.0277 -0.3100 -5.9417 19 6 3.1176 0.4914 -7.1213 20 6 3.5151 -0.3896 -8.3074 21 6 4.8585 -0.1031 -8.9813 22 6 3.5524 0.2628 -9.6909 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1613 3.4845 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 4.5556 -0.3710 -3.0935 31 1 1.6854 0.8825 -4.9196 32 1 3.4038 1.1942 -4.5762 33 1 2.1513 0.9548 -7.3203 34 1 3.8697 1.2671 -6.9772 35 1 3.1925 -1.4292 -8.2498 36 1 5.4593 0.7128 -8.5795 37 1 5.4195 -0.9542 -9.3673 38 1 3.2548 -0.3476 -10.5434 39 1 3.2942 1.3198 -9.7560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068483091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:00 Heat of formation + Delta-G solvation = -80.955473 kcal Electronic energy + Delta-G solvation = -17341.541924 eV Core-core repulsion = 14477.780032 eV Total energy + Delta-G solvation = -2863.761891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.84633 -37.67476 -36.28349 -35.13479 -32.48099 -30.41172 -28.35837 -26.78546 -25.24527 -23.79605 -22.67941 -21.48047 -20.72065 -19.76312 -17.15281 -16.63322 -16.43137 -16.20123 -15.20673 -15.00484 -14.94209 -14.50447 -13.89398 -13.54184 -13.21690 -12.75272 -12.56215 -12.32796 -11.83875 -11.63842 -11.40720 -11.27533 -10.92370 -10.80288 -10.75584 -10.55719 -10.44467 -10.29342 -10.16767 -10.11354 -9.64465 -9.54449 -8.82984 -8.47076 -7.27598 -6.02742 -4.09067 3.26465 3.32237 3.36193 3.39844 3.62726 4.39954 4.49507 4.59891 4.62264 4.73950 5.02656 5.05692 5.15921 5.23333 5.29022 5.31662 5.39939 5.42649 5.50289 5.58279 5.61108 5.79420 5.83791 5.93958 6.15732 6.40492 6.86215 7.11302 7.12573 7.22534 7.48535 7.78581 7.87243 7.92400 8.27454 8.39597 8.68218 9.01992 9.56974 11.03665 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.062939 B = 0.003385 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.765425 B = 8270.531050 C = 8540.490968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.683 5.683 13 C 0.034 3.966 14 C 0.113 3.887 15 H 0.111 0.889 16 O -0.550 6.550 17 C 0.032 3.968 18 O -0.374 6.374 19 C 0.091 3.909 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.176 4.176 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.003 0.997 26 H 0.261 0.739 27 H 0.339 0.661 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.367 0.633 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 2.079 -19.443 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.316 5.316 13 C -0.097 4.097 14 C 0.053 3.947 15 H 0.128 0.872 16 O -0.354 6.354 17 C -0.045 4.045 18 O -0.293 6.293 19 C 0.014 3.986 20 C -0.169 4.169 21 C -0.215 4.215 22 C -0.213 4.213 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.709 1.189 -19.569 19.953 hybrid contribution 1.164 1.092 1.152 1.969 sum 4.873 2.281 -18.417 19.187 Atomic orbital electron populations 1.21728 0.97917 0.99427 0.99285 1.19111 0.92618 0.92227 0.85635 0.98314 1.21244 1.31486 1.12560 0.90428 0.92156 1.24926 0.95036 0.94998 0.99073 1.69888 1.36673 1.22920 1.23577 0.86561 0.79086 0.79820 0.81941 1.20298 1.21320 1.20137 1.60628 1.32960 1.32375 1.05596 1.22463 1.00385 0.94392 0.92446 1.22033 0.85340 0.96820 0.90464 0.87150 1.86640 1.19399 1.37406 1.91927 1.23311 0.99475 0.95232 0.86523 1.87957 1.90446 1.35080 1.15847 1.21989 0.99512 0.92504 0.84572 1.22143 1.01556 1.01162 0.92063 1.23074 0.90737 1.03554 1.04087 1.22986 1.01841 1.01479 0.95016 0.94863 0.90076 0.97815 0.92877 0.84300 0.90939 0.96090 0.78659 0.92410 0.93247 0.93073 0.93447 0.86758 0.88720 0.88598 0.88427 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.19 37.15 0.34 -2.81 16 2 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.74 16 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.89 6.30 -107.96 -0.68 -15.57 16 13 C 0.03 0.59 5.19 -3.82 -0.02 0.57 16 14 C 0.11 1.72 3.52 -26.73 -0.09 1.63 16 15 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 16 O -0.55 -8.72 12.64 -40.10 -0.51 -9.22 16 17 C 0.03 0.41 5.57 37.16 0.21 0.61 16 18 O -0.37 -5.09 10.31 -40.10 -0.41 -5.50 16 19 C 0.09 0.95 6.22 37.16 0.23 1.18 16 20 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 21 C -0.18 -1.44 10.18 -26.69 -0.27 -1.71 16 22 C -0.18 -1.30 10.26 -26.69 -0.27 -1.57 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.34 7.41 7.61 -39.29 -0.30 7.11 16 28 H 0.07 1.26 7.44 -51.93 -0.39 0.88 16 29 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 30 H 0.37 4.57 9.05 45.56 0.41 4.98 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -30.38 322.69 -8.09 -38.47 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.96 Total: 7.49 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.00 Total: -11.97 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.05 Total: -40.58 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.92 Total: -14.72 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.38 -8.09 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068483091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.484 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds