Wall clock time and date at job start Mon Mar 30 2020 03:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.47408 * 60.00073 * 14 13 12 16 16 O 1.42906 * 109.47257 * 300.00098 * 14 13 12 17 17 C 1.53004 * 109.47360 * 180.02562 * 14 13 12 18 18 O 1.42895 * 109.47510 * 184.99941 * 17 14 13 19 19 C 1.42897 * 114.00173 * 179.97438 * 18 17 14 20 20 C 1.53004 * 109.46981 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.49886 * 243.74395 * 20 19 18 22 22 C 1.53007 * 117.49537 * 175.08554 * 20 19 18 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 26 26 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 30 30 H 0.96709 * 113.99630 * 299.99873 * 16 14 13 31 31 H 1.09001 * 109.46559 * 305.00226 * 17 14 13 32 32 H 1.08997 * 109.47028 * 64.99590 * 17 14 13 33 33 H 1.08997 * 109.47380 * 299.99905 * 19 18 17 34 34 H 1.09000 * 109.47081 * 60.00021 * 19 18 17 35 35 H 1.08998 * 115.55141 * 29.42500 * 20 19 18 36 36 H 1.09002 * 117.50339 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49845 * 145.02477 * 21 20 19 38 38 H 1.08995 * 117.49926 * 214.97826 * 22 20 19 39 39 H 1.09001 * 117.49876 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 1.9183 -1.3563 -3.8030 16 8 3.8999 -1.0496 -3.3052 17 6 2.6610 0.4203 -4.7694 18 8 3.0277 -0.3100 -5.9417 19 6 3.1176 0.4914 -7.1213 20 6 3.5151 -0.3896 -8.3074 21 6 4.8585 -0.1031 -8.9813 22 6 3.5524 0.2628 -9.6909 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1613 3.4845 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 4.5556 -0.3710 -3.0935 31 1 1.6854 0.8825 -4.9196 32 1 3.4038 1.1942 -4.5762 33 1 2.1513 0.9548 -7.3203 34 1 3.8697 1.2671 -6.9772 35 1 3.1925 -1.4292 -8.2498 36 1 5.4593 0.7128 -8.5795 37 1 5.4195 -0.9542 -9.3673 38 1 3.2548 -0.3476 -10.5434 39 1 3.2942 1.3198 -9.7560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068483091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:00 Heat of formation + Delta-G solvation = -103.097346 kcal Electronic energy + Delta-G solvation = -17342.502068 eV Core-core repulsion = 14477.780032 eV Total energy + Delta-G solvation = -2864.722035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86191 -38.72135 -37.40273 -36.69392 -34.39341 -31.88473 -29.88541 -27.87195 -27.26778 -25.17542 -23.25947 -22.68476 -21.72876 -21.51344 -18.75002 -17.81941 -17.53614 -17.43827 -16.92584 -16.19671 -15.94714 -15.77855 -15.25757 -15.00215 -14.75350 -14.27347 -13.69182 -13.51140 -13.32026 -13.04984 -12.80755 -12.69578 -12.39549 -12.30435 -12.19118 -12.13488 -12.02358 -11.70321 -11.40722 -11.20124 -11.00777 -10.79628 -10.57392 -10.45737 -9.06270 -8.14508 -6.28633 1.42331 1.44480 1.52125 2.37285 2.44636 2.91711 3.13949 3.47348 3.60836 3.89713 3.95956 4.06767 4.08429 4.14082 4.29606 4.33548 4.42043 4.47436 4.58049 4.68578 4.71355 4.76875 4.84033 5.00550 5.06512 5.13385 5.20387 5.22698 5.24143 5.45963 5.65681 5.84973 6.21354 6.23361 6.46340 6.75415 6.83912 6.99459 7.41863 8.90965 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.062939 B = 0.003385 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.765425 B = 8270.531050 C = 8540.490968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.027 1.027 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.686 5.686 13 C 0.037 3.963 14 C 0.124 3.876 15 H 0.095 0.905 16 O -0.566 6.566 17 C 0.039 3.961 18 O -0.399 6.399 19 C 0.088 3.912 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.160 4.160 23 H 0.026 0.974 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.263 0.737 27 H 0.337 0.663 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.382 0.618 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 2.326 -20.364 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 H -0.010 1.010 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.318 5.318 13 C -0.093 4.093 14 C 0.064 3.936 15 H 0.112 0.888 16 O -0.373 6.373 17 C -0.038 4.038 18 O -0.319 6.319 19 C 0.012 3.988 20 C -0.192 4.192 21 C -0.216 4.216 22 C -0.197 4.197 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.230 0.770 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.310 1.443 -20.514 21.012 hybrid contribution 0.996 1.027 1.368 1.979 sum 5.306 2.470 -19.146 20.021 Atomic orbital electron populations 1.21567 0.97724 0.98863 0.99217 1.18922 0.92757 0.90814 0.86760 1.00989 1.21573 1.31857 1.12764 0.91771 0.92515 1.25726 0.95123 0.95674 1.02003 1.70006 1.37354 1.23984 1.24307 0.85544 0.78777 0.78621 0.78273 1.19525 1.20738 1.19803 1.60529 1.32926 1.33062 1.05318 1.22501 1.00929 0.94119 0.91798 1.21802 0.84806 0.96469 0.90525 0.88751 1.86600 1.19904 1.38684 1.92064 1.23164 1.00827 0.94438 0.85399 1.87914 1.90662 1.36458 1.16816 1.22156 1.00420 0.92605 0.83634 1.22142 1.03242 1.00673 0.93132 1.23165 0.90683 1.03902 1.03858 1.23086 1.00628 1.02117 0.93892 0.95500 0.92344 0.95635 0.92746 0.84509 0.90692 0.95404 0.76992 0.91077 0.91598 0.92111 0.92440 0.88170 0.88252 0.88194 0.87395 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 9.19 71.98 0.66 -5.16 16 2 C 0.22 11.14 2.60 44.16 0.11 11.26 16 3 H -0.03 -1.54 7.80 -2.39 -0.02 -1.55 16 4 C -0.54 -30.31 8.59 25.60 0.22 -30.09 16 5 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.01 11.32 21.45 0.24 -52.77 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.69 -29.81 6.30 -495.47 -3.12 -32.94 16 13 C 0.04 1.25 5.19 86.30 0.45 1.70 16 14 C 0.12 3.64 3.52 30.59 0.11 3.75 16 15 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 16 O -0.57 -17.43 12.64 -144.32 -1.82 -19.25 16 17 C 0.04 0.91 5.57 71.98 0.40 1.32 16 18 O -0.40 -10.33 10.31 -144.32 -1.49 -11.82 16 19 C 0.09 1.69 6.22 71.98 0.45 2.14 16 20 C -0.17 -3.10 6.05 -10.79 -0.07 -3.17 16 21 C -0.18 -2.61 10.18 30.62 0.31 -2.29 16 22 C -0.16 -2.02 10.26 30.62 0.31 -1.71 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 25 H 0.02 1.12 7.45 -2.39 -0.02 1.10 16 26 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.34 14.74 7.61 -89.69 -0.68 14.05 16 28 H 0.07 2.52 7.44 -2.39 -0.02 2.50 16 29 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 30 H 0.38 9.03 9.05 -74.05 -0.67 8.36 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -64.04 322.69 -1.08 -65.12 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.33 Total: 26.81 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.41 Total: -21.03 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.88 Total: -85.70 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -3.31 Total: -31.08 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.04 -1.08 -65.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068483091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.975 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds