Wall clock time and date at job start Mon Mar 30 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46949 * 2 1 4 4 C 1.50693 * 109.46698 * 120.00626 * 2 1 3 5 5 H 1.07998 * 119.99915 * 120.00504 * 4 2 1 6 6 C 1.37881 * 120.00177 * 299.99444 * 4 2 1 7 7 N 1.31517 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46988 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47148 * 119.99964 * 8 6 4 11 11 H 1.48497 * 109.47047 * 240.00232 * 8 6 4 12 12 N 1.46903 * 109.46607 * 240.00395 * 2 1 3 13 13 C 1.46895 * 111.00201 * 85.00568 * 12 2 1 14 14 C 1.52995 * 109.47362 * 179.97438 * 13 12 2 15 15 O 1.42898 * 109.47249 * 64.99800 * 14 13 12 16 16 C 1.42901 * 114.00267 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47361 * 180.02562 * 16 15 14 18 18 H 1.08993 * 110.75064 * 51.52760 * 17 16 15 19 19 C 1.55304 * 110.84593 * 174.99907 * 17 16 15 20 20 C 1.54944 * 100.97800 * 152.30096 * 19 17 16 21 21 O 1.43693 * 105.11450 * 323.61333 * 20 19 17 22 22 C 1.43240 * 109.99409 * 24.36003 * 21 20 19 23 23 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46962 * 299.99655 * 1 2 3 25 25 H 1.09007 * 109.46888 * 59.99355 * 1 2 3 26 26 H 0.97002 * 119.99862 * 179.97438 * 7 6 4 27 27 H 1.00892 * 111.00443 * 321.04339 * 12 2 1 28 28 H 1.09004 * 109.47316 * 59.98989 * 13 12 2 29 29 H 1.09005 * 109.47038 * 299.99426 * 13 12 2 30 30 H 1.09005 * 109.46995 * 304.99528 * 14 13 12 31 31 H 1.09003 * 109.47366 * 184.99481 * 14 13 12 32 32 H 1.09003 * 109.47108 * 59.99655 * 16 15 14 33 33 H 1.09008 * 109.46727 * 300.00007 * 16 15 14 34 34 H 1.09002 * 111.12488 * 270.24072 * 19 17 16 35 35 H 1.08995 * 111.12730 * 34.36067 * 19 17 16 36 36 H 1.08996 * 110.31114 * 82.48962 * 20 19 17 37 37 H 1.09004 * 110.31323 * 204.65778 * 20 19 17 38 38 H 1.09001 * 109.83319 * 238.81565 * 22 21 20 39 39 H 1.08998 * 109.90329 * 117.88243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1199 4.0079 9 1 3.1482 -2.2861 3.6036 10 1 3.1472 -0.1863 4.8161 11 1 1.1676 -1.5869 4.8163 12 7 2.0196 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 8 1.6511 -1.5387 -3.9444 16 6 2.0371 -2.3069 -5.0858 17 6 0.9569 -3.3470 -5.3896 18 1 -0.0250 -2.8776 -5.4502 19 6 1.2833 -4.1168 -6.6983 20 6 0.5790 -5.4702 -6.4281 21 8 0.7606 -5.7132 -5.0235 22 6 0.9677 -4.4744 -4.3349 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 0.7082 1.1607 3.4844 27 1 1.4496 -1.4978 -1.4102 28 1 2.7589 1.0463 -2.1181 29 1 1.0871 0.6165 -2.5525 30 1 3.5520 -1.0009 -3.3389 31 1 2.7271 0.1647 -4.4016 32 1 2.9812 -2.8120 -4.8815 33 1 2.1568 -1.6465 -5.9447 34 1 0.8532 -3.6165 -7.5660 35 1 2.3584 -4.2504 -6.8178 36 1 -0.4825 -5.3983 -6.6650 37 1 1.0451 -6.2628 -7.0134 38 1 1.9297 -4.4923 -3.8226 39 1 0.1673 -4.3129 -3.6129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069037254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:28 Heat of formation + Delta-G solvation = -101.930895 kcal Electronic energy + Delta-G solvation = -17754.918723 eV Core-core repulsion = 14890.247269 eV Total energy + Delta-G solvation = -2864.671454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65173 -37.83198 -35.74811 -33.22766 -32.35531 -30.09479 -29.30264 -26.47952 -25.33340 -25.03651 -22.55351 -21.59356 -20.73373 -20.11457 -17.16408 -16.37474 -16.36280 -16.02693 -15.66615 -14.89682 -14.64567 -14.40934 -13.85144 -13.54344 -13.29542 -12.86366 -12.58957 -12.15337 -11.88036 -11.59770 -11.56167 -11.29178 -11.15066 -10.99636 -10.87104 -10.85124 -10.57949 -10.36973 -10.07641 -9.79030 -9.62505 -9.44769 -8.92076 -8.31465 -7.14752 -5.93429 -3.96253 3.35328 3.42760 3.48738 3.59839 3.80133 4.26955 4.48778 4.66937 4.71442 5.01014 5.03812 5.15735 5.20853 5.32794 5.38191 5.38249 5.47023 5.58170 5.61063 5.68084 5.69715 5.89841 5.93927 6.02577 6.28116 6.38083 6.77112 6.86780 6.92990 7.17715 7.33314 7.43867 7.81280 7.94978 8.34084 8.63970 8.70173 9.11675 9.69037 11.13739 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.004357 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.694923 B = 6424.296636 C = 6954.094582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.209 3.791 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.682 5.682 13 C 0.062 3.938 14 C 0.066 3.934 15 O -0.384 6.384 16 C 0.074 3.926 17 C -0.120 4.120 18 H 0.093 0.907 19 C -0.150 4.150 20 C 0.052 3.948 21 O -0.388 6.388 22 C 0.058 3.942 23 H 0.027 0.973 24 H 0.087 0.913 25 H 0.004 0.996 26 H 0.258 0.742 27 H 0.333 0.667 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -6.538 -18.697 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.101 3.899 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.313 5.313 13 C -0.068 4.068 14 C -0.010 4.010 15 O -0.303 6.303 16 C -0.003 4.003 17 C -0.139 4.139 18 H 0.111 0.889 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.307 6.307 22 C -0.018 4.018 23 H 0.047 0.953 24 H 0.106 0.894 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.043 -6.564 -18.184 19.361 hybrid contribution -0.489 0.114 0.391 0.636 sum 0.554 -6.451 -17.793 18.935 Atomic orbital electron populations 1.22409 1.00708 0.99212 1.00326 1.19186 0.89667 0.94330 0.86703 0.95047 1.21214 1.29944 1.12315 0.89626 0.91918 1.24960 0.95402 0.95236 0.99043 1.69903 1.37505 1.23338 1.23133 0.86458 0.78499 0.79659 0.82885 1.19732 1.21198 1.21226 1.60828 1.58263 1.09137 1.03071 1.21909 0.99244 0.95568 0.90125 1.22686 0.92488 0.89557 0.96296 1.87901 1.46260 1.49287 1.46880 1.22343 0.96385 0.92689 0.88852 1.22711 1.00649 0.95783 0.94752 0.88864 1.23265 1.01996 0.95991 0.97549 1.23335 0.99600 0.96543 0.82974 1.88418 1.93587 1.29797 1.18930 1.23209 1.02436 0.81748 0.94419 0.95347 0.89391 0.97670 0.93204 0.85032 0.90487 0.95651 0.92544 0.93929 0.93036 0.93394 0.89739 0.90132 0.92207 0.89811 0.90653 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.94 37.16 0.33 -3.85 16 2 C 0.21 5.40 2.57 -68.86 -0.18 5.23 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.96 8.84 -34.44 -0.30 -14.26 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.18 11.32 55.43 0.63 -25.55 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.68 -15.02 6.23 -107.95 -0.67 -15.70 16 13 C 0.06 1.12 5.90 -3.83 -0.02 1.10 16 14 C 0.07 0.97 6.28 37.15 0.23 1.21 16 15 O -0.38 -5.72 9.81 -35.23 -0.35 -6.06 16 16 C 0.07 0.83 5.28 37.16 0.20 1.03 16 17 C -0.12 -1.26 3.26 -88.67 -0.29 -1.55 16 18 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.15 -1.20 6.61 -24.48 -0.16 -1.36 16 20 C 0.05 0.47 7.78 38.18 0.30 0.77 16 21 O -0.39 -4.98 11.36 -35.23 -0.40 -5.38 16 22 C 0.06 0.72 7.36 37.88 0.28 1.00 16 23 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.33 7.26 8.03 -39.30 -0.32 6.94 16 28 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 29 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 33 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -30.31 315.58 -7.57 -37.88 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.80 Total: 2.46 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 0.29 Total: -9.26 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.05 Total: -41.25 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.75 Total: -11.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.31 -7.57 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069037254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.051 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds