Wall clock time and date at job start Mon Mar 30 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46949 * 2 1 4 4 C 1.50693 * 109.46698 * 120.00626 * 2 1 3 5 5 H 1.07998 * 119.99915 * 120.00504 * 4 2 1 6 6 C 1.37881 * 120.00177 * 299.99444 * 4 2 1 7 7 N 1.31517 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46988 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47148 * 119.99964 * 8 6 4 11 11 H 1.48497 * 109.47047 * 240.00232 * 8 6 4 12 12 N 1.46903 * 109.46607 * 240.00395 * 2 1 3 13 13 C 1.46895 * 111.00201 * 85.00568 * 12 2 1 14 14 C 1.52995 * 109.47362 * 179.97438 * 13 12 2 15 15 O 1.42898 * 109.47249 * 64.99800 * 14 13 12 16 16 C 1.42901 * 114.00267 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47361 * 180.02562 * 16 15 14 18 18 H 1.08993 * 110.75064 * 51.52760 * 17 16 15 19 19 C 1.55304 * 110.84593 * 174.99907 * 17 16 15 20 20 C 1.54944 * 100.97800 * 152.30096 * 19 17 16 21 21 O 1.43693 * 105.11450 * 323.61333 * 20 19 17 22 22 C 1.43240 * 109.99409 * 24.36003 * 21 20 19 23 23 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46962 * 299.99655 * 1 2 3 25 25 H 1.09007 * 109.46888 * 59.99355 * 1 2 3 26 26 H 0.97002 * 119.99862 * 179.97438 * 7 6 4 27 27 H 1.00892 * 111.00443 * 321.04339 * 12 2 1 28 28 H 1.09004 * 109.47316 * 59.98989 * 13 12 2 29 29 H 1.09005 * 109.47038 * 299.99426 * 13 12 2 30 30 H 1.09005 * 109.46995 * 304.99528 * 14 13 12 31 31 H 1.09003 * 109.47366 * 184.99481 * 14 13 12 32 32 H 1.09003 * 109.47108 * 59.99655 * 16 15 14 33 33 H 1.09008 * 109.46727 * 300.00007 * 16 15 14 34 34 H 1.09002 * 111.12488 * 270.24072 * 19 17 16 35 35 H 1.08995 * 111.12730 * 34.36067 * 19 17 16 36 36 H 1.08996 * 110.31114 * 82.48962 * 20 19 17 37 37 H 1.09004 * 110.31323 * 204.65778 * 20 19 17 38 38 H 1.09001 * 109.83319 * 238.81565 * 22 21 20 39 39 H 1.08998 * 109.90329 * 117.88243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1199 4.0079 9 1 3.1482 -2.2861 3.6036 10 1 3.1472 -0.1863 4.8161 11 1 1.1676 -1.5869 4.8163 12 7 2.0196 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 8 1.6511 -1.5387 -3.9444 16 6 2.0371 -2.3069 -5.0858 17 6 0.9569 -3.3470 -5.3896 18 1 -0.0250 -2.8776 -5.4502 19 6 1.2833 -4.1168 -6.6983 20 6 0.5790 -5.4702 -6.4281 21 8 0.7606 -5.7132 -5.0235 22 6 0.9677 -4.4744 -4.3349 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 0.7082 1.1607 3.4844 27 1 1.4496 -1.4978 -1.4102 28 1 2.7589 1.0463 -2.1181 29 1 1.0871 0.6165 -2.5525 30 1 3.5520 -1.0009 -3.3389 31 1 2.7271 0.1647 -4.4016 32 1 2.9812 -2.8120 -4.8815 33 1 2.1568 -1.6465 -5.9447 34 1 0.8532 -3.6165 -7.5660 35 1 2.3584 -4.2504 -6.8178 36 1 -0.4825 -5.3983 -6.6650 37 1 1.0451 -6.2628 -7.0134 38 1 1.9297 -4.4923 -3.8226 39 1 0.1673 -4.3129 -3.6129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069037254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:28 Heat of formation + Delta-G solvation = -123.292981 kcal Electronic energy + Delta-G solvation = -17755.845053 eV Core-core repulsion = 14890.247269 eV Total energy + Delta-G solvation = -2865.597784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50988 -38.99587 -37.48185 -34.71788 -33.76941 -31.55218 -30.35844 -28.05339 -27.21792 -26.30935 -23.33473 -22.96621 -22.07722 -21.60117 -18.38600 -18.03683 -17.42636 -17.01762 -16.90127 -16.59140 -15.84916 -15.77354 -15.18579 -14.92160 -14.57443 -14.22883 -13.91911 -13.53107 -13.27786 -13.05687 -12.91756 -12.76647 -12.56805 -12.42481 -12.22944 -12.15219 -12.06415 -11.83383 -11.70993 -11.62955 -11.00656 -10.54516 -10.48717 -10.45783 -8.94674 -8.09231 -6.20325 1.42488 1.43896 1.56799 2.44961 2.65035 2.98479 3.18936 3.49677 3.66808 3.86449 3.91004 4.22212 4.25044 4.33867 4.37674 4.41839 4.53218 4.60281 4.63436 4.73615 4.80066 4.85466 4.89883 4.90578 4.93932 4.96876 5.01694 5.13365 5.24482 5.42228 5.69447 5.81934 6.03293 6.27378 6.31353 6.66581 6.84372 6.95522 7.49761 8.96698 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.004357 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.694923 B = 6424.296636 C = 6954.094582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.685 5.685 13 C 0.059 3.941 14 C 0.076 3.924 15 O -0.409 6.409 16 C 0.072 3.928 17 C -0.118 4.118 18 H 0.090 0.910 19 C -0.138 4.138 20 C 0.042 3.958 21 O -0.413 6.413 22 C 0.055 3.945 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.333 0.667 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -7.016 -20.215 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.104 3.896 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.315 5.315 13 C -0.070 4.070 14 C 0.000 4.000 15 O -0.329 6.329 16 C -0.004 4.004 17 C -0.136 4.136 18 H 0.108 0.892 19 C -0.175 4.175 20 C -0.034 4.034 21 O -0.334 6.334 22 C -0.021 4.021 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.095 0.905 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.589 -7.045 -19.731 21.011 hybrid contribution -0.679 0.249 0.796 1.075 sum 0.910 -6.797 -18.935 20.138 Atomic orbital electron populations 1.22217 1.00225 0.98973 0.99886 1.18976 0.89942 0.92856 0.87856 0.97754 1.21486 1.30331 1.12382 0.91125 0.92860 1.25736 0.95467 0.95898 1.01924 1.70020 1.38098 1.24340 1.23926 0.85448 0.78067 0.78590 0.79141 1.19392 1.20544 1.20608 1.60710 1.57781 1.09610 1.03406 1.22001 0.99209 0.95524 0.90310 1.22521 0.91912 0.90032 0.95561 1.87864 1.46662 1.49739 1.48596 1.22528 0.96635 0.92863 0.88409 1.22694 1.00458 0.95021 0.95452 0.89188 1.23256 1.02633 0.94802 0.96854 1.23615 1.00602 0.97940 0.81228 1.88387 1.93687 1.30198 1.21100 1.23155 1.01145 0.82807 0.94999 0.95348 0.91911 0.95880 0.92995 0.84987 0.90504 0.96168 0.92552 0.90716 0.92672 0.90980 0.87288 0.89250 0.91432 0.88051 0.91683 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.76 8.94 71.98 0.64 -7.11 16 2 C 0.21 11.16 2.57 44.17 0.11 11.28 16 3 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 4 C -0.51 -29.54 8.84 25.60 0.23 -29.31 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.05 16 8 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.68 -30.25 6.23 -495.46 -3.09 -33.34 16 13 C 0.06 2.12 5.90 86.30 0.51 2.63 16 14 C 0.08 2.09 6.28 71.98 0.45 2.54 16 15 O -0.41 -11.53 9.81 -148.98 -1.46 -12.99 16 16 C 0.07 1.45 5.28 71.98 0.38 1.83 16 17 C -0.12 -2.27 3.26 -9.53 -0.03 -2.30 16 18 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 19 C -0.14 -1.81 6.61 32.05 0.21 -1.59 16 20 C 0.04 0.67 7.78 72.65 0.57 1.24 16 21 O -0.41 -10.42 11.36 -148.98 -1.69 -12.11 16 22 C 0.06 1.37 7.36 72.45 0.53 1.90 16 23 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 24 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 25 H 0.02 1.03 7.45 -2.38 -0.02 1.01 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.33 14.60 8.03 -89.70 -0.72 13.88 16 28 H 0.08 2.72 8.06 -2.39 -0.02 2.70 16 29 H 0.02 0.74 7.44 -2.38 -0.02 0.72 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.08 7.93 -2.39 -0.02 1.06 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.04 8.04 -2.39 -0.02 1.02 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.06 1.70 7.67 -2.39 -0.02 1.68 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.05 315.58 0.37 -64.68 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.29 Total: 18.85 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.05 Total: -18.02 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.84 Total: -87.39 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -3.15 Total: -25.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.05 0.37 -64.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069037254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.613 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds