Wall clock time and date at job start Mon Mar 30 2020 04:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99966 * 2 1 4 4 C 1.53002 * 109.47166 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47133 * 65.00117 * 4 3 2 6 6 C 1.42900 * 114.00415 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47423 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47226 * 65.00128 * 7 6 5 9 9 C 1.46898 * 111.00036 * 190.00110 * 8 7 6 10 10 C 1.50694 * 109.47037 * 159.87773 * 9 8 7 11 11 H 1.08004 * 120.00417 * 354.19372 * 10 9 8 12 12 C 1.37878 * 120.00341 * 174.20058 * 10 9 8 13 13 N 1.31518 * 119.99631 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00433 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47052 * 119.99619 * 14 12 10 17 17 H 1.48497 * 109.47043 * 239.99705 * 14 12 10 18 18 C 1.46903 * 110.99640 * 66.04777 * 8 7 6 19 19 C 1.53000 * 117.49543 * 261.94654 * 18 8 7 20 20 C 1.52998 * 117.49459 * 193.28909 * 18 8 7 21 21 H 1.09003 * 109.47320 * 59.99978 * 1 2 3 22 22 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47635 * 300.00452 * 1 2 3 24 24 H 1.09005 * 109.46907 * 59.99899 * 3 2 1 25 25 H 1.08998 * 109.47117 * 299.99996 * 3 2 1 26 26 H 1.08999 * 109.46880 * 305.00431 * 4 3 2 27 27 H 1.08997 * 109.47097 * 184.99948 * 4 3 2 28 28 H 1.09006 * 109.46522 * 60.00239 * 6 5 4 29 29 H 1.08996 * 109.47267 * 300.00449 * 6 5 4 30 30 H 1.08996 * 109.47350 * 185.00501 * 7 6 5 31 31 H 1.08999 * 109.47507 * 305.00170 * 7 6 5 32 32 H 1.09001 * 109.46857 * 279.87058 * 9 8 7 33 33 H 1.08994 * 109.47670 * 39.87288 * 9 8 7 34 34 H 0.96997 * 119.99623 * 180.02562 * 13 12 10 35 35 H 1.08995 * 115.55258 * 47.61353 * 18 8 7 36 36 H 1.09001 * 117.49937 * 0.02562 * 19 18 8 37 37 H 1.09005 * 117.50062 * 145.02004 * 19 18 8 38 38 H 1.09001 * 117.49631 * 214.97648 * 20 18 8 39 39 H 1.09002 * 117.50069 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2350 -2.6612 8 7 5.3575 0.6699 -3.7581 9 6 5.4508 -0.0110 -5.0563 10 6 4.6250 0.7327 -6.0741 11 1 4.0108 1.5662 -5.7664 12 6 4.6531 0.3491 -7.3981 13 7 5.4012 -0.6656 -7.7729 14 14 3.6289 1.2705 -8.6596 15 1 2.8806 2.3629 -7.9871 16 1 4.5219 1.8470 -9.6966 17 1 2.6694 0.3338 -9.2977 18 6 6.1845 1.8840 -3.7397 19 6 5.5906 3.1333 -3.0859 20 6 5.7325 3.0597 -4.6083 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9784 2.1766 0.0902 28 1 5.7362 -0.2121 -0.5074 29 1 5.8632 1.3959 -1.2601 30 1 6.7968 -0.4377 -2.7020 31 1 5.1757 -1.1702 -2.7609 32 1 6.4913 -0.0348 -5.3802 33 1 5.0770 -1.0303 -4.9598 34 1 5.4213 -0.9352 -8.7045 35 1 7.2567 1.7209 -3.6318 36 1 4.5866 3.0543 -2.6690 37 1 6.2723 3.7924 -2.5482 38 1 6.5076 3.6703 -5.0715 39 1 4.8219 2.9322 -5.1936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070480825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:12 Heat of formation + Delta-G solvation = -55.838308 kcal Electronic energy + Delta-G solvation = -18197.157058 eV Core-core repulsion = 15334.484328 eV Total energy + Delta-G solvation = -2862.672729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -38.42413 -37.70255 -36.57629 -33.57528 -32.45976 -30.43508 -28.53462 -26.26414 -25.80175 -22.40378 -22.17633 -21.87823 -21.52729 -19.30207 -16.80112 -16.64526 -16.40648 -15.34704 -15.28094 -15.18077 -14.75038 -14.42352 -14.15791 -13.54252 -13.23367 -12.62587 -12.32629 -12.05981 -11.85247 -11.65889 -11.34456 -11.18794 -11.03478 -10.81472 -10.71126 -10.61949 -10.38465 -9.86784 -9.64556 -9.48913 -9.18075 -9.04946 -9.02204 -8.31805 -7.14033 -5.92923 -3.91765 3.36027 3.43352 3.48066 3.81597 3.99928 4.48445 4.64838 4.88662 5.06111 5.23770 5.29740 5.36656 5.38922 5.41955 5.55787 5.62226 5.67186 5.68500 5.71540 5.76046 5.83783 5.87267 6.08296 6.23728 6.27772 6.43571 6.51826 6.79229 7.10373 7.17884 7.31590 7.46357 7.63857 7.95669 8.22667 8.33034 8.65892 9.14959 9.70344 11.17933 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.006126 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.788532 B = 4569.676147 C = 5135.640632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.065 3.935 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.071 3.929 7 C 0.060 3.940 8 N -0.500 5.500 9 C 0.194 3.806 10 C -0.491 4.491 11 H 0.068 0.932 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.024 3.976 19 C -0.186 4.186 20 C -0.155 4.155 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.077 0.923 32 H -0.004 1.004 33 H 0.025 0.975 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 5.048 15.554 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.012 4.012 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.006 4.006 7 C -0.069 4.069 8 N -0.225 5.225 9 C 0.070 3.930 10 C -0.530 4.530 11 H 0.086 0.914 12 C -0.149 4.149 13 N -0.543 5.543 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.085 4.085 19 C -0.224 4.224 20 C -0.192 4.192 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.609 4.845 15.307 16.456 hybrid contribution 0.392 0.454 -0.686 0.911 sum -3.217 5.298 14.621 15.881 Atomic orbital electron populations 1.22717 0.81441 1.02661 0.99667 1.87971 1.19286 1.27464 1.95315 1.22547 0.92796 0.85348 1.00508 1.22410 0.93103 0.97299 0.88689 1.88145 1.21762 1.81347 1.36060 1.22552 0.81910 0.99164 0.97016 1.22030 0.97557 0.96739 0.90540 1.61878 1.51296 1.04719 1.04618 1.19723 0.95871 0.93877 0.83534 1.21265 1.25189 1.15162 0.91347 0.91439 1.24984 0.95939 0.95430 0.98505 1.69971 1.40258 1.27267 1.16796 0.86512 0.80094 0.79823 0.81433 1.19673 1.21247 1.21176 1.22072 0.93243 0.87796 1.05381 1.23034 1.02034 1.00654 0.96672 1.23102 1.04333 0.99474 0.92282 0.93901 0.89765 0.94597 0.92526 0.92135 0.93365 0.92390 0.94383 0.93310 0.94653 0.90421 0.98569 0.95737 0.93187 0.91676 0.88840 0.90606 0.90340 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.61 10.67 -40.08 -0.43 -6.04 16 3 C 0.06 0.81 6.32 37.16 0.23 1.05 16 4 C 0.06 0.83 6.32 37.16 0.23 1.06 16 5 O -0.35 -6.27 10.25 -40.08 -0.41 -6.68 16 6 C 0.07 1.13 5.91 37.15 0.22 1.35 16 7 C 0.06 1.14 5.32 -3.83 -0.02 1.12 16 8 N -0.50 -11.20 4.52 -228.09 -1.03 -12.23 16 9 C 0.19 5.19 4.77 -4.98 -0.02 5.17 16 10 C -0.49 -13.91 7.82 -34.44 -0.27 -14.18 16 11 H 0.07 1.91 5.78 -52.48 -0.30 1.60 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 C 0.02 0.49 4.18 -67.71 -0.28 0.21 16 19 C -0.19 -3.18 9.17 -26.69 -0.24 -3.43 16 20 C -0.15 -3.05 9.48 -26.69 -0.25 -3.31 16 21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.74 6.29 -51.93 -0.33 0.42 16 30 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.08 1.55 7.83 -51.93 -0.41 1.14 16 32 H 0.00 -0.10 7.99 -51.93 -0.42 -0.52 16 33 H 0.02 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.12 2.63 5.44 -51.93 -0.28 2.35 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -32.03 320.53 -7.48 -39.51 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.76 Total: -1.75 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 0.61 Total: -8.10 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.29 Total: -38.76 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.84 Total: -12.71 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.03 -7.48 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070480825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.333 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds