Wall clock time and date at job start Mon Mar 30 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99966 * 2 1 4 4 C 1.53002 * 109.47166 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47133 * 65.00117 * 4 3 2 6 6 C 1.42900 * 114.00415 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47423 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47226 * 65.00128 * 7 6 5 9 9 C 1.46898 * 111.00036 * 190.00110 * 8 7 6 10 10 C 1.50694 * 109.47037 * 159.87773 * 9 8 7 11 11 H 1.08004 * 120.00417 * 354.19372 * 10 9 8 12 12 C 1.37878 * 120.00341 * 174.20058 * 10 9 8 13 13 N 1.31518 * 119.99631 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00433 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47052 * 119.99619 * 14 12 10 17 17 H 1.48497 * 109.47043 * 239.99705 * 14 12 10 18 18 C 1.46903 * 110.99640 * 66.04777 * 8 7 6 19 19 C 1.53000 * 117.49543 * 261.94654 * 18 8 7 20 20 C 1.52998 * 117.49459 * 193.28909 * 18 8 7 21 21 H 1.09003 * 109.47320 * 59.99978 * 1 2 3 22 22 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47635 * 300.00452 * 1 2 3 24 24 H 1.09005 * 109.46907 * 59.99899 * 3 2 1 25 25 H 1.08998 * 109.47117 * 299.99996 * 3 2 1 26 26 H 1.08999 * 109.46880 * 305.00431 * 4 3 2 27 27 H 1.08997 * 109.47097 * 184.99948 * 4 3 2 28 28 H 1.09006 * 109.46522 * 60.00239 * 6 5 4 29 29 H 1.08996 * 109.47267 * 300.00449 * 6 5 4 30 30 H 1.08996 * 109.47350 * 185.00501 * 7 6 5 31 31 H 1.08999 * 109.47507 * 305.00170 * 7 6 5 32 32 H 1.09001 * 109.46857 * 279.87058 * 9 8 7 33 33 H 1.08994 * 109.47670 * 39.87288 * 9 8 7 34 34 H 0.96997 * 119.99623 * 180.02562 * 13 12 10 35 35 H 1.08995 * 115.55258 * 47.61353 * 18 8 7 36 36 H 1.09001 * 117.49937 * 0.02562 * 19 18 8 37 37 H 1.09005 * 117.50062 * 145.02004 * 19 18 8 38 38 H 1.09001 * 117.49631 * 214.97648 * 20 18 8 39 39 H 1.09002 * 117.50069 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3221 7 6 5.7266 -0.2350 -2.6612 8 7 5.3575 0.6699 -3.7581 9 6 5.4508 -0.0110 -5.0563 10 6 4.6250 0.7327 -6.0741 11 1 4.0108 1.5662 -5.7664 12 6 4.6531 0.3491 -7.3981 13 7 5.4012 -0.6656 -7.7729 14 14 3.6289 1.2705 -8.6596 15 1 2.8806 2.3629 -7.9871 16 1 4.5219 1.8470 -9.6966 17 1 2.6694 0.3338 -9.2977 18 6 6.1845 1.8840 -3.7397 19 6 5.5906 3.1333 -3.0859 20 6 5.7325 3.0597 -4.6083 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9784 2.1766 0.0902 28 1 5.7362 -0.2121 -0.5074 29 1 5.8632 1.3959 -1.2601 30 1 6.7968 -0.4377 -2.7020 31 1 5.1757 -1.1702 -2.7609 32 1 6.4913 -0.0348 -5.3802 33 1 5.0770 -1.0303 -4.9598 34 1 5.4213 -0.9352 -8.7045 35 1 7.2567 1.7209 -3.6318 36 1 4.5866 3.0543 -2.6690 37 1 6.2723 3.7924 -2.5482 38 1 6.5076 3.6703 -5.0715 39 1 4.8219 2.9322 -5.1936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070480825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:10 Heat of formation + Delta-G solvation = -78.577327 kcal Electronic energy + Delta-G solvation = -18198.143096 eV Core-core repulsion = 15334.484328 eV Total energy + Delta-G solvation = -2863.658767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.75310 -38.95998 -37.82115 -35.33866 -34.42770 -31.69436 -30.08562 -27.79662 -27.03785 -24.14982 -23.43096 -23.36800 -22.99704 -20.94686 -18.58242 -17.85597 -17.65537 -16.74449 -16.69712 -16.36321 -16.24619 -15.94625 -15.67430 -15.05084 -14.62977 -14.21119 -13.78726 -13.74589 -13.18778 -13.06301 -12.99913 -12.68232 -12.52442 -12.39218 -12.27648 -12.07014 -11.81051 -11.64630 -11.18031 -11.04751 -10.66495 -10.59201 -10.52124 -10.33747 -8.93003 -8.14104 -6.21408 1.40342 1.41329 1.54559 2.42653 2.86456 2.93846 3.07253 3.17600 3.31245 4.08366 4.21937 4.23325 4.25597 4.29514 4.38481 4.42936 4.51196 4.52052 4.57280 4.65061 4.69086 4.77736 4.85008 4.87830 4.90320 4.94528 5.03744 5.14016 5.23746 5.39820 5.52521 5.79182 6.13378 6.26812 6.47046 6.50783 6.73532 6.94003 7.46000 8.96820 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.006126 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.788532 B = 4569.676147 C = 5135.640632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.061 3.939 4 C 0.056 3.944 5 O -0.393 6.393 6 C 0.081 3.919 7 C 0.055 3.945 8 N -0.510 5.510 9 C 0.210 3.790 10 C -0.500 4.500 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.940 5.940 14 Si 0.963 3.037 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.282 1.282 18 C 0.001 3.999 19 C -0.142 4.142 20 C -0.172 4.172 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.056 0.944 32 H -0.033 1.033 33 H -0.007 1.007 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 7.058 17.126 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.020 4.020 5 O -0.312 6.312 6 C 0.004 3.996 7 C -0.073 4.073 8 N -0.234 5.234 9 C 0.084 3.916 10 C -0.538 4.538 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.581 5.581 14 Si 0.788 3.212 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.208 1.208 18 C -0.108 4.108 19 C -0.179 4.179 20 C -0.209 4.209 21 H 0.057 0.943 22 H 0.109 0.891 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.075 0.925 32 H -0.015 1.015 33 H 0.011 0.989 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.970 6.869 16.910 18.679 hybrid contribution 0.495 -0.190 -1.104 1.224 sum -3.475 6.679 15.807 17.508 Atomic orbital electron populations 1.22883 0.79855 1.03522 1.00701 1.87917 1.21246 1.28888 1.95557 1.22704 0.92491 0.84820 1.01495 1.22682 0.93600 0.98423 0.87295 1.88095 1.22365 1.82205 1.38549 1.22443 0.81789 0.99989 0.95389 1.22124 0.97906 0.95855 0.91405 1.61801 1.52719 1.05737 1.03154 1.19359 0.93555 0.92659 0.86016 1.21519 1.25159 1.15045 0.92066 0.91582 1.25871 0.97094 0.96239 1.00694 1.70103 1.41806 1.28833 1.17402 0.85423 0.78472 0.78643 0.78651 1.18705 1.20375 1.20788 1.22219 0.93565 0.87391 1.07651 1.23036 1.02227 0.98039 0.94634 1.23052 1.03589 1.00184 0.94113 0.94274 0.89142 0.92073 0.88998 0.93530 0.92234 0.90016 0.91749 0.91951 0.93631 0.92533 1.01524 0.98922 0.92980 0.90898 0.89341 0.86585 0.88642 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -11.81 10.67 -144.35 -1.54 -13.35 16 3 C 0.06 1.42 6.32 71.98 0.45 1.88 16 4 C 0.06 1.36 6.32 71.98 0.45 1.81 16 5 O -0.39 -13.39 10.25 -144.35 -1.48 -14.87 16 6 C 0.08 2.44 5.91 71.98 0.43 2.87 16 7 C 0.06 2.12 5.32 86.30 0.46 2.58 16 8 N -0.51 -23.18 4.52 -875.56 -3.95 -27.13 16 9 C 0.21 11.73 4.77 85.56 0.41 12.13 16 10 C -0.50 -29.08 7.82 25.60 0.20 -28.87 16 11 H 0.07 3.81 5.78 -2.91 -0.02 3.79 16 12 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 13 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 14 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 15 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 C 0.00 0.03 4.18 44.91 0.19 0.22 16 19 C -0.14 -4.43 9.17 30.62 0.28 -4.15 16 20 C -0.17 -6.61 9.48 30.62 0.29 -6.32 16 21 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 1.70 6.29 -2.39 -0.02 1.69 16 30 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 31 H 0.06 2.36 7.83 -2.39 -0.02 2.34 16 32 H -0.03 -1.99 7.99 -2.39 -0.02 -2.01 16 33 H -0.01 -0.44 7.73 -2.39 -0.02 -0.46 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 3.86 5.44 -2.39 -0.01 3.85 16 Total: -1.00 -71.16 320.53 1.21 -69.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.00 Total: 11.42 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.87 Total: -15.73 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.67 Total: -85.12 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -3.02 Total: -28.23 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.16 1.21 -69.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070480825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.626 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds