Wall clock time and date at job start Mon Mar 30 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48505 * 109.46992 * 269.99525 * 3 2 1 5 5 H 1.48494 * 109.47354 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00285 * 3 2 1 7 7 C 1.37869 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99973 * 179.97438 * 7 2 1 10 10 S 1.81399 * 109.47319 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53975 * 68.38085 * 10 9 7 12 12 O 1.42091 * 110.54607 * 291.62962 * 10 9 7 13 13 C 1.76198 * 104.45051 * 180.02562 * 10 9 7 14 14 C 1.38271 * 119.99027 * 270.25957 * 13 10 9 15 15 C 1.38219 * 120.05279 * 180.25746 * 14 13 10 16 16 C 1.38227 * 120.02402 * 359.48356 * 15 14 13 17 17 C 1.38435 * 119.97416 * 0.26250 * 16 15 14 18 18 F 1.35097 * 120.02437 * 179.97438 * 17 16 15 19 19 C 1.38179 * 119.98426 * 90.00426 * 13 10 9 20 20 H 0.97000 * 119.99682 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46965 * 60.00223 * 9 7 2 22 22 H 1.08995 * 109.47434 * 300.00314 * 9 7 2 23 23 H 1.08000 * 119.97479 * 0.02562 * 14 13 10 24 24 H 1.08002 * 119.99072 * 179.76964 * 15 14 13 25 25 H 1.07999 * 120.01289 * 180.23490 * 16 15 14 26 26 H 1.07994 * 120.01414 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9043 0.0016 11 8 3.8197 -3.5391 -1.2346 12 8 3.8205 -3.5365 1.2393 13 6 5.8714 -2.7501 0.0015 14 6 6.5595 -2.6853 -1.1961 15 6 7.9368 -2.5697 -1.1977 16 6 8.6271 -2.5079 -0.0017 17 6 7.9389 -2.5673 1.1980 18 9 8.6125 -2.5076 2.3675 19 6 6.5593 -2.6886 1.1984 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 6.0206 -2.7289 -2.1310 24 1 8.4736 -2.5230 -2.1337 25 1 9.7030 -2.4137 -0.0032 26 1 6.0214 -2.7354 2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087113985.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:26 Heat of formation + Delta-G solvation = -93.233197 kcal Electronic energy + Delta-G solvation = -15138.960384 eV Core-core repulsion = 12224.573805 eV Total energy + Delta-G solvation = -2914.386579 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.00130 -38.95803 -36.36202 -35.20194 -33.32125 -31.48159 -30.59821 -29.86673 -23.77122 -22.96197 -22.76128 -18.94546 -17.85327 -17.07790 -16.56046 -16.29381 -15.80137 -15.53531 -15.38025 -14.89149 -14.19565 -14.01020 -13.36912 -12.78818 -12.63954 -12.59097 -12.23345 -11.80402 -11.69212 -11.34752 -11.23805 -10.91062 -10.59599 -10.30331 -9.94771 -9.64784 -9.34635 -8.91981 -8.89002 -6.37176 -4.47463 0.57035 0.90177 1.02128 3.11041 3.18796 3.20228 3.23114 3.65863 4.07407 4.16714 4.49183 4.58299 4.69491 4.83353 4.97730 5.07944 5.27552 5.40345 5.79888 5.86002 5.98071 6.03454 6.13425 6.26395 6.67835 7.09313 7.94557 8.54153 9.16843 10.73621 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.007639 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.129018 B = 3664.513415 C = 3953.465352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.091 3.909 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.089 0.911 9 C -0.446 4.446 10 S 2.488 3.512 11 O -0.947 6.947 12 O -0.947 6.947 13 C -0.629 4.629 14 C -0.037 4.037 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.074 3.926 18 F -0.138 7.138 19 C -0.059 4.059 20 H 0.273 0.727 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.150 0.850 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.068 -1.240 -1.158 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.116 4.116 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.107 0.893 9 C -0.581 4.581 10 S 2.669 3.331 11 O -0.944 6.944 12 O -0.945 6.945 13 C -0.711 4.711 14 C -0.055 4.055 15 C -0.133 4.133 16 C -0.131 4.131 17 C 0.054 3.946 18 F -0.117 7.117 19 C -0.078 4.078 20 H 0.083 0.917 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.168 0.832 24 H 0.158 0.842 25 H 0.157 0.843 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 15.545 -1.938 -1.106 15.704 hybrid contribution 1.202 1.560 0.236 1.983 sum 16.747 -0.378 -0.870 16.774 Atomic orbital electron populations 1.69860 1.06282 1.27926 1.47176 1.24855 0.94730 0.99105 0.92906 0.86760 0.80490 0.83014 0.79156 1.19464 1.20491 1.18647 1.20089 0.84802 0.96486 1.56234 0.89275 1.27954 1.08261 1.15549 1.06305 1.06070 0.72362 0.80158 0.74526 1.93487 1.82131 1.74146 1.44628 1.93488 1.82193 1.74238 1.44539 1.31332 1.28854 1.12981 0.97942 1.21126 0.94653 0.92348 0.97406 1.21168 0.94284 1.00081 0.97789 1.21385 1.00942 0.99247 0.91492 1.17745 0.90376 1.04885 0.81569 1.91509 1.80160 1.94004 1.45996 1.20995 0.92695 0.95145 0.98976 0.91718 0.89255 0.89633 0.83248 0.84192 0.84314 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.43 0.77 -24.63 15 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 15 3 Si 0.88 19.77 27.47 -169.99 -4.67 15.10 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 15 7 C -0.54 -14.47 9.68 -34.44 -0.33 -14.80 15 8 H 0.09 2.58 7.96 -52.49 -0.42 2.17 15 9 C -0.45 -9.51 4.80 36.01 0.17 -9.34 15 10 S 2.49 49.20 5.08 -107.50 -0.55 48.65 15 11 O -0.95 -20.60 17.13 -57.54 -0.99 -21.59 15 12 O -0.95 -21.03 17.12 -57.54 -0.99 -22.02 15 13 C -0.63 -10.06 5.65 -39.59 -0.22 -10.28 15 14 C -0.04 -0.50 9.47 -39.58 -0.37 -0.87 15 15 C -0.11 -1.25 10.04 -39.59 -0.40 -1.65 15 16 C -0.11 -1.25 10.03 -39.51 -0.40 -1.64 15 17 C 0.07 1.00 7.30 -39.42 -0.29 0.72 15 18 F -0.14 -1.87 17.27 2.25 0.04 -1.83 15 19 C -0.06 -0.89 9.45 -39.51 -0.37 -1.27 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.09 1.75 7.20 -51.92 -0.37 1.38 15 22 H 0.09 1.62 7.57 -51.93 -0.39 1.23 15 23 H 0.15 1.84 7.58 -52.49 -0.40 1.44 15 24 H 0.14 1.04 8.06 -52.49 -0.42 0.62 15 25 H 0.14 1.12 8.06 -52.49 -0.42 0.70 15 26 H 0.15 2.24 7.57 -52.49 -0.40 1.84 15 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -32.46 252.98 -6.86 -39.32 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -1.99 Total: -0.08 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: -2.31 Total: -36.74 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.77 Total: -24.63 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.97 Total: -43.61 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Atomic # 16 Polarization: 49.20 SS G_CDS: -0.55 Total: 48.65 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.46 -6.86 -39.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087113985.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.911 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds