Wall clock time and date at job start Mon Mar 30 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48505 * 109.46992 * 269.99525 * 3 2 1 5 5 H 1.48494 * 109.47354 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00285 * 3 2 1 7 7 C 1.37869 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99973 * 179.97438 * 7 2 1 10 10 S 1.81399 * 109.47319 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53975 * 68.38085 * 10 9 7 12 12 O 1.42091 * 110.54607 * 291.62962 * 10 9 7 13 13 C 1.76198 * 104.45051 * 180.02562 * 10 9 7 14 14 C 1.38271 * 119.99027 * 270.25957 * 13 10 9 15 15 C 1.38219 * 120.05279 * 180.25746 * 14 13 10 16 16 C 1.38227 * 120.02402 * 359.48356 * 15 14 13 17 17 C 1.38435 * 119.97416 * 0.26250 * 16 15 14 18 18 F 1.35097 * 120.02437 * 179.97438 * 17 16 15 19 19 C 1.38179 * 119.98426 * 90.00426 * 13 10 9 20 20 H 0.97000 * 119.99682 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46965 * 60.00223 * 9 7 2 22 22 H 1.08995 * 109.47434 * 300.00314 * 9 7 2 23 23 H 1.08000 * 119.97479 * 0.02562 * 14 13 10 24 24 H 1.08002 * 119.99072 * 179.76964 * 15 14 13 25 25 H 1.07999 * 120.01289 * 180.23490 * 16 15 14 26 26 H 1.07994 * 120.01414 * 0.02562 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9043 0.0016 11 8 3.8197 -3.5391 -1.2346 12 8 3.8205 -3.5365 1.2393 13 6 5.8714 -2.7501 0.0015 14 6 6.5595 -2.6853 -1.1961 15 6 7.9368 -2.5697 -1.1977 16 6 8.6271 -2.5079 -0.0017 17 6 7.9389 -2.5673 1.1980 18 9 8.6125 -2.5076 2.3675 19 6 6.5593 -2.6886 1.1984 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 6.0206 -2.7289 -2.1310 24 1 8.4736 -2.5230 -2.1337 25 1 9.7030 -2.4137 -0.0032 26 1 6.0214 -2.7354 2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087113985.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:26 Heat of formation + Delta-G solvation = -116.940108 kcal Electronic energy + Delta-G solvation = -15139.988393 eV Core-core repulsion = 12224.573805 eV Total energy + Delta-G solvation = -2915.414587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.01294 -39.97426 -38.03486 -36.87612 -35.32655 -32.52021 -31.78409 -31.59501 -25.30312 -24.40465 -23.83648 -20.26342 -19.56076 -18.72006 -17.68317 -17.40793 -17.26113 -16.73068 -16.70442 -16.42758 -15.97665 -14.93215 -14.69573 -14.43338 -14.25038 -13.77571 -13.50770 -13.27175 -13.07287 -13.04588 -12.74514 -12.61628 -12.27856 -11.85564 -11.72923 -11.24219 -10.91934 -10.49603 -9.94113 -8.43411 -6.60730 -0.79688 -0.35515 0.01960 1.36109 1.38964 1.49796 2.12782 2.28152 2.29853 2.87504 3.01168 3.03496 3.38489 3.70404 3.86219 4.01295 4.20593 4.40516 4.42700 4.58640 4.82450 4.91242 5.03676 5.10485 5.19956 5.71351 5.83374 6.44194 7.07795 8.71775 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.007639 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.129018 B = 3664.513415 C = 3953.465352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.232 1.232 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.458 4.458 10 S 2.502 3.498 11 O -0.976 6.976 12 O -0.985 6.985 13 C -0.635 4.635 14 C -0.045 4.045 15 C -0.098 4.098 16 C -0.092 4.092 17 C 0.065 3.935 18 F -0.140 7.140 19 C -0.079 4.079 20 H 0.277 0.723 21 H 0.111 0.889 22 H 0.117 0.883 23 H 0.160 0.840 24 H 0.187 0.813 25 H 0.179 0.821 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.154 0.210 -2.140 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.154 1.154 7 C -0.597 4.597 8 H 0.061 0.939 9 C -0.592 4.592 10 S 2.688 3.312 11 O -0.973 6.973 12 O -0.982 6.982 13 C -0.723 4.723 14 C -0.064 4.064 15 C -0.117 4.117 16 C -0.111 4.111 17 C 0.045 3.955 18 F -0.119 7.119 19 C -0.098 4.098 20 H 0.086 0.914 21 H 0.129 0.871 22 H 0.135 0.865 23 H 0.177 0.823 24 H 0.204 0.796 25 H 0.197 0.803 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.573 -0.507 -2.085 19.690 hybrid contribution 0.033 1.004 0.528 1.134 sum 19.607 0.497 -1.557 19.675 Atomic orbital electron populations 1.70016 1.08549 1.29334 1.49012 1.25987 0.95651 1.03709 0.92125 0.85693 0.80090 0.77039 0.80373 1.17686 1.20403 1.15438 1.20370 0.88084 0.95071 1.56158 0.93907 1.27995 1.04608 1.17996 1.08581 1.05004 0.73956 0.79012 0.73185 1.93439 1.83920 1.74466 1.45479 1.93433 1.84116 1.74773 1.45876 1.30418 1.25215 1.16962 0.99668 1.21458 0.96346 0.91966 0.96659 1.21654 0.92900 0.97485 0.99646 1.21891 1.02896 0.96095 0.90198 1.17886 0.89748 1.05335 0.82548 1.91508 1.79923 1.94064 1.46372 1.21017 0.93986 0.96372 0.98473 0.91400 0.87079 0.86542 0.82280 0.79622 0.80339 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.96 21.45 0.30 -55.86 15 2 C 0.03 1.50 5.47 84.65 0.46 1.96 15 3 Si 0.95 39.76 27.47 68.60 1.88 41.64 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 6 H -0.23 -8.51 6.54 99.48 0.65 -7.86 15 7 C -0.56 -31.17 9.68 25.60 0.25 -30.92 15 8 H 0.04 2.68 7.96 -2.91 -0.02 2.66 15 9 C -0.46 -19.39 4.80 71.24 0.34 -19.04 15 10 S 2.50 100.81 5.08 -56.49 -0.29 100.52 15 11 O -0.98 -43.49 17.13 -127.65 -2.19 -45.68 15 12 O -0.98 -45.69 17.12 -127.65 -2.19 -47.87 15 13 C -0.63 -19.33 5.65 22.26 0.13 -19.20 15 14 C -0.05 -1.08 9.47 22.27 0.21 -0.87 15 15 C -0.10 -1.60 10.04 22.26 0.22 -1.37 15 16 C -0.09 -1.56 10.03 22.31 0.22 -1.33 15 17 C 0.06 1.55 7.30 22.38 0.16 1.71 15 18 F -0.14 -3.41 17.27 44.97 0.78 -2.64 15 19 C -0.08 -2.28 9.45 22.31 0.21 -2.07 15 20 H 0.28 15.27 8.31 -92.71 -0.77 14.50 15 21 H 0.11 4.20 7.20 -2.39 -0.02 4.19 15 22 H 0.12 4.19 7.57 -2.39 -0.02 4.17 15 23 H 0.16 3.44 7.58 -2.91 -0.02 3.42 15 24 H 0.19 1.38 8.06 -2.91 -0.02 1.36 15 25 H 0.18 1.64 8.06 -2.91 -0.02 1.62 15 26 H 0.15 4.30 7.57 -2.91 -0.02 4.28 15 Total: -1.00 -74.39 252.98 1.66 -72.73 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.14 Total: 8.29 kcal Atomic # 6 Polarization: -73.35 SS G_CDS: 2.21 Total: -71.14 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.30 Total: -55.86 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -4.37 Total: -93.55 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.88 Total: 41.64 kcal Atomic # 16 Polarization: 100.81 SS G_CDS: -0.29 Total: 100.52 kcal Total: -74.39 1.66 -72.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087113985.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.208 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds