Wall clock time and date at job start Mon Mar 30 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00345 * 2 1 4 4 O 1.42900 * 109.51920 * 302.74259 * 3 2 1 5 5 C 1.42898 * 114.00467 * 303.71508 * 4 3 2 6 6 C 1.53121 * 109.52308 * 182.61507 * 3 2 1 7 7 C 1.53043 * 109.27083 * 182.50354 * 6 3 2 8 8 N 1.46850 * 109.57606 * 59.08258 * 7 6 3 9 9 C 1.46904 * 111.00083 * 174.18863 * 8 7 6 10 10 H 1.09004 * 109.46871 * 64.21182 * 9 8 7 11 11 C 1.52996 * 109.47167 * 184.21252 * 9 8 7 12 12 C 1.50706 * 109.47199 * 304.21347 * 9 8 7 13 13 H 1.08000 * 119.99797 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99860 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00270 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99707 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46629 * 120.00689 * 16 14 12 19 19 H 1.48498 * 109.47100 * 240.00128 * 16 14 12 20 20 C 1.46838 * 111.20029 * 298.29039 * 8 7 6 21 21 C 1.53040 * 109.52716 * 61.73860 * 20 8 7 22 22 H 1.08991 * 109.47308 * 294.29645 * 1 2 3 23 23 H 1.09004 * 109.47154 * 174.28795 * 1 2 3 24 24 H 1.09000 * 109.46754 * 54.29628 * 1 2 3 25 25 H 1.09002 * 109.47175 * 294.04316 * 5 4 3 26 26 H 1.09002 * 109.46396 * 54.03299 * 5 4 3 27 27 H 1.08994 * 109.47754 * 174.03538 * 5 4 3 28 28 H 1.08991 * 109.50063 * 302.37865 * 6 3 2 29 29 H 1.08996 * 109.50151 * 62.50382 * 6 3 2 30 30 H 1.09000 * 109.41470 * 299.07086 * 7 6 3 31 31 H 1.09003 * 109.45404 * 179.12452 * 7 6 3 32 32 H 1.08998 * 109.46690 * 180.02562 * 11 9 8 33 33 H 1.08998 * 109.47082 * 300.00289 * 11 9 8 34 34 H 1.09004 * 109.47283 * 60.00182 * 11 9 8 35 35 H 0.96998 * 120.00308 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46187 * 301.72113 * 20 8 7 37 37 H 1.09005 * 109.46345 * 181.75739 * 20 8 7 38 38 H 1.08996 * 109.50530 * 180.88423 * 21 20 8 39 39 H 1.08997 * 109.49665 * 60.75950 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.5390 2.0379 -1.1329 5 6 1.7842 1.3938 -2.3846 6 6 3.5354 1.1864 -0.0658 7 6 4.1544 2.5847 -0.0025 8 7 3.7491 3.2461 1.2444 9 6 4.4350 4.5355 1.4033 10 1 4.1265 5.2118 0.6061 11 6 4.0690 5.1441 2.7585 12 6 5.9254 4.3236 1.3338 13 1 6.3233 3.3305 1.1858 14 6 6.7809 5.3977 1.4580 15 7 6.2963 6.6070 1.6376 16 14 8.6284 5.1349 1.3725 17 1 8.9142 3.6923 1.1666 18 1 9.1876 5.9165 0.2403 19 1 9.2520 5.5873 2.6420 20 6 2.2917 3.4140 1.3070 21 6 1.6171 2.0405 1.2843 22 1 -0.3633 0.4228 0.9366 23 1 -0.3634 -1.0226 -0.1023 24 1 -0.3633 0.5998 -0.8345 25 1 2.8582 1.3475 -2.5653 26 1 1.3763 0.3833 -2.3592 27 1 1.3053 1.9589 -3.1841 28 1 3.8908 0.5936 0.7769 29 1 3.8227 0.7022 -0.9992 30 1 3.8101 3.1722 -0.8537 31 1 5.2409 2.5025 -0.0335 32 1 4.5776 6.1010 2.8762 33 1 2.9911 5.2973 2.8088 34 1 4.3775 4.4678 3.5558 35 1 6.8982 7.3626 1.7254 36 1 1.9562 3.9976 0.4497 37 1 2.0253 3.9344 2.2270 38 1 0.5348 2.1661 1.3150 39 1 1.9416 1.4615 2.1489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108327168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:31 Heat of formation + Delta-G solvation = -87.589205 kcal Electronic energy + Delta-G solvation = -19217.809764 eV Core-core repulsion = 16353.760213 eV Total energy + Delta-G solvation = -2864.049552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96686 -37.12341 -35.75428 -33.48683 -31.28514 -30.62406 -28.26853 -26.58810 -26.51811 -25.24420 -22.75348 -22.21399 -19.94796 -19.18867 -17.32286 -16.35998 -16.17941 -15.53388 -15.23469 -14.58268 -14.33499 -13.89243 -13.60374 -13.47762 -13.29757 -12.78451 -12.36976 -12.20101 -11.94417 -11.63375 -11.39916 -11.11477 -10.98728 -10.73336 -10.61045 -10.50431 -10.40355 -10.04857 -10.00432 -9.79651 -9.70947 -9.44465 -8.77496 -8.40018 -7.12254 -5.99599 -4.04119 3.30538 3.38485 3.42663 3.67000 3.94864 4.42027 4.91681 5.05954 5.10365 5.32694 5.38297 5.40979 5.47665 5.50566 5.60365 5.69565 5.74931 5.90321 5.93987 6.01171 6.10576 6.19199 6.39624 6.55405 6.68037 6.72347 6.75902 6.90604 7.09327 7.18808 7.56144 7.58593 7.76755 7.84699 8.23822 8.35256 8.63163 9.02718 9.60967 11.07262 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037978 B = 0.006340 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.097351 B = 4415.441780 C = 4717.491851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.269 3.731 4 O -0.390 6.390 5 C 0.030 3.970 6 C -0.124 4.124 7 C 0.071 3.929 8 N -0.534 5.534 9 C 0.213 3.787 10 H -0.001 1.001 11 C -0.132 4.132 12 C -0.503 4.503 13 H 0.064 0.936 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.056 3.944 21 C -0.120 4.120 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.008 0.992 34 H 0.034 0.966 35 H 0.259 0.741 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -9.889 -4.191 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C 0.193 3.807 4 O -0.311 6.311 5 C -0.066 4.066 6 C -0.162 4.162 7 C -0.057 4.057 8 N -0.259 5.259 9 C 0.107 3.893 10 H 0.016 0.984 11 C -0.190 4.190 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.158 4.158 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.657 -9.976 -3.755 14.383 hybrid contribution 0.608 0.415 -0.792 1.081 sum -9.049 -9.561 -4.547 13.927 Atomic orbital electron populations 1.22636 0.81439 1.01910 1.00648 1.88026 1.19966 1.29726 1.94291 1.22945 0.92463 0.78898 0.86434 1.88045 1.81429 1.47099 1.14540 1.22645 1.00713 0.97637 0.85651 1.22020 0.91419 0.99927 1.02850 1.21852 1.01085 0.91381 0.91392 1.62096 1.03598 1.26368 1.33856 1.19217 0.93163 0.83360 0.93566 0.98387 1.21841 0.96182 1.02790 0.98235 1.21197 0.90189 0.93873 1.48891 0.91801 1.24933 0.98864 0.95143 0.95302 1.69903 1.34508 0.98727 1.50082 0.86482 0.85422 0.78227 0.77522 1.19743 1.21187 1.21041 1.21964 0.90078 0.94242 1.00957 1.22000 1.00154 0.98172 0.95461 0.93825 0.90223 0.93522 0.93648 0.93685 0.90168 0.89795 0.91489 0.95524 0.88955 0.89692 0.97284 0.94661 0.93064 0.95137 0.90563 0.91600 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.05 101.05 1.02 1.36 16 2 O -0.40 -5.95 9.49 -59.04 -0.56 -6.51 16 3 C 0.27 4.31 0.63 -26.61 -0.02 4.30 16 4 O -0.39 -6.31 8.38 -59.04 -0.49 -6.81 16 5 C 0.03 0.39 10.07 101.05 1.02 1.41 16 6 C -0.12 -2.10 5.05 -26.65 -0.13 -2.23 16 7 C 0.07 1.44 5.07 -3.83 -0.02 1.42 16 8 N -0.53 -11.66 4.52 -228.07 -1.03 -12.69 16 9 C 0.21 5.43 2.06 -68.86 -0.14 5.28 16 10 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 11 C -0.13 -3.26 8.75 37.16 0.33 -2.93 16 12 C -0.50 -13.73 7.86 -34.44 -0.27 -14.00 16 13 H 0.06 1.73 6.40 -52.49 -0.34 1.40 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.06 1.08 5.08 -3.84 -0.02 1.06 16 21 C -0.12 -1.94 4.89 -26.65 -0.13 -2.07 16 22 H 0.04 0.48 6.84 -51.93 -0.36 0.12 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.54 6.97 -51.93 -0.36 0.18 16 25 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 26 H 0.04 0.54 6.93 -51.93 -0.36 0.18 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.03 6.65 -51.93 -0.35 0.68 16 30 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 31 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16 32 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 33 H 0.01 0.19 6.28 -51.93 -0.33 -0.14 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 36 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 37 H 0.08 1.44 6.01 -51.93 -0.31 1.13 16 38 H 0.07 0.95 6.87 -51.93 -0.36 0.59 16 39 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -29.17 293.86 -6.73 -35.90 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.21 Total: -0.81 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 1.53 Total: -4.88 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.40 Total: -37.58 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.05 Total: -13.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.17 -6.73 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108327168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.690 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds