Wall clock time and date at job start Mon Mar 30 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00345 * 2 1 4 4 O 1.42900 * 109.51920 * 302.74259 * 3 2 1 5 5 C 1.42898 * 114.00467 * 303.71508 * 4 3 2 6 6 C 1.53121 * 109.52308 * 182.61507 * 3 2 1 7 7 C 1.53043 * 109.27083 * 182.50354 * 6 3 2 8 8 N 1.46850 * 109.57606 * 59.08258 * 7 6 3 9 9 C 1.46904 * 111.00083 * 174.18863 * 8 7 6 10 10 H 1.09004 * 109.46871 * 64.21182 * 9 8 7 11 11 C 1.52996 * 109.47167 * 184.21252 * 9 8 7 12 12 C 1.50706 * 109.47199 * 304.21347 * 9 8 7 13 13 H 1.08000 * 119.99797 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99860 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00270 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99707 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46629 * 120.00689 * 16 14 12 19 19 H 1.48498 * 109.47100 * 240.00128 * 16 14 12 20 20 C 1.46838 * 111.20029 * 298.29039 * 8 7 6 21 21 C 1.53040 * 109.52716 * 61.73860 * 20 8 7 22 22 H 1.08991 * 109.47308 * 294.29645 * 1 2 3 23 23 H 1.09004 * 109.47154 * 174.28795 * 1 2 3 24 24 H 1.09000 * 109.46754 * 54.29628 * 1 2 3 25 25 H 1.09002 * 109.47175 * 294.04316 * 5 4 3 26 26 H 1.09002 * 109.46396 * 54.03299 * 5 4 3 27 27 H 1.08994 * 109.47754 * 174.03538 * 5 4 3 28 28 H 1.08991 * 109.50063 * 302.37865 * 6 3 2 29 29 H 1.08996 * 109.50151 * 62.50382 * 6 3 2 30 30 H 1.09000 * 109.41470 * 299.07086 * 7 6 3 31 31 H 1.09003 * 109.45404 * 179.12452 * 7 6 3 32 32 H 1.08998 * 109.46690 * 180.02562 * 11 9 8 33 33 H 1.08998 * 109.47082 * 300.00289 * 11 9 8 34 34 H 1.09004 * 109.47283 * 60.00182 * 11 9 8 35 35 H 0.96998 * 120.00308 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46187 * 301.72113 * 20 8 7 37 37 H 1.09005 * 109.46345 * 181.75739 * 20 8 7 38 38 H 1.08996 * 109.50530 * 180.88423 * 21 20 8 39 39 H 1.08997 * 109.49665 * 60.75950 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.5390 2.0379 -1.1329 5 6 1.7842 1.3938 -2.3846 6 6 3.5354 1.1864 -0.0658 7 6 4.1544 2.5847 -0.0025 8 7 3.7491 3.2461 1.2444 9 6 4.4350 4.5355 1.4033 10 1 4.1265 5.2118 0.6061 11 6 4.0690 5.1441 2.7585 12 6 5.9254 4.3236 1.3338 13 1 6.3233 3.3305 1.1858 14 6 6.7809 5.3977 1.4580 15 7 6.2963 6.6070 1.6376 16 14 8.6284 5.1349 1.3725 17 1 8.9142 3.6923 1.1666 18 1 9.1876 5.9165 0.2403 19 1 9.2520 5.5873 2.6420 20 6 2.2917 3.4140 1.3070 21 6 1.6171 2.0405 1.2843 22 1 -0.3633 0.4228 0.9366 23 1 -0.3634 -1.0226 -0.1023 24 1 -0.3633 0.5998 -0.8345 25 1 2.8582 1.3475 -2.5653 26 1 1.3763 0.3833 -2.3592 27 1 1.3053 1.9589 -3.1841 28 1 3.8908 0.5936 0.7769 29 1 3.8227 0.7022 -0.9992 30 1 3.8101 3.1722 -0.8537 31 1 5.2409 2.5025 -0.0335 32 1 4.5776 6.1010 2.8762 33 1 2.9911 5.2973 2.8088 34 1 4.3775 4.4678 3.5558 35 1 6.8982 7.3626 1.7254 36 1 1.9562 3.9976 0.4497 37 1 2.0253 3.9344 2.2270 38 1 0.5348 2.1661 1.3150 39 1 1.9416 1.4615 2.1489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108327168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:31 Heat of formation + Delta-G solvation = -107.101420 kcal Electronic energy + Delta-G solvation = -19218.655878 eV Core-core repulsion = 16353.760213 eV Total energy + Delta-G solvation = -2864.895665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25341 -38.71676 -36.89732 -35.35882 -33.05564 -32.09739 -29.94400 -27.78853 -27.65255 -27.15525 -24.31469 -23.71077 -21.71496 -20.68171 -18.52693 -18.33562 -17.64994 -16.85732 -16.72940 -16.02686 -15.76350 -15.34235 -15.08852 -14.93543 -14.68820 -14.41374 -13.90454 -13.64090 -13.29786 -13.07208 -12.96195 -12.76651 -12.52299 -12.45809 -12.32061 -12.18295 -12.03812 -11.90773 -11.55780 -11.39975 -10.97188 -10.88296 -10.62354 -10.44634 -8.94489 -8.10472 -6.22350 1.42141 1.44006 1.55758 2.42934 2.54231 2.79685 3.17163 3.32102 3.75311 3.75954 4.22030 4.40654 4.43122 4.46326 4.50016 4.51030 4.55580 4.60949 4.67184 4.77774 4.79706 4.84622 4.87435 4.98151 5.02736 5.05629 5.11752 5.22899 5.27255 5.52685 5.62945 5.73576 5.80795 6.26541 6.39192 6.45259 6.73511 6.92359 7.46896 8.96003 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037978 B = 0.006340 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.097351 B = 4415.441780 C = 4717.491851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.273 3.727 4 O -0.408 6.408 5 C 0.025 3.975 6 C -0.117 4.117 7 C 0.076 3.924 8 N -0.536 5.536 9 C 0.216 3.784 10 H -0.042 1.042 11 C -0.121 4.121 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.058 3.942 21 C -0.114 4.114 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 -11.547 -4.320 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.196 3.804 4 O -0.329 6.329 5 C -0.071 4.071 6 C -0.155 4.155 7 C -0.052 4.052 8 N -0.261 5.261 9 C 0.110 3.890 10 H -0.024 1.024 11 C -0.179 4.179 12 C -0.556 4.556 13 H 0.079 0.921 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.786 3.214 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.070 4.070 21 C -0.152 4.152 22 H 0.069 0.931 23 H 0.123 0.877 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.261 -11.657 -3.890 16.009 hybrid contribution 0.707 0.917 -0.800 1.408 sum -9.554 -10.740 -4.691 15.120 Atomic orbital electron populations 1.22878 0.79571 1.03693 1.01094 1.88002 1.21897 1.28497 1.94338 1.22696 0.91697 0.79515 0.86466 1.88027 1.81484 1.47911 1.15501 1.22823 1.00839 0.98509 0.84879 1.21893 0.92499 0.97393 1.03747 1.21758 1.00224 0.93101 0.90114 1.62070 1.05160 1.24171 1.34748 1.19029 0.92994 0.84408 0.92606 1.02409 1.21656 0.97311 1.01278 0.97636 1.21453 0.91354 0.93853 1.48937 0.92063 1.25724 1.03294 0.94855 0.94916 1.70031 1.36004 0.99433 1.50653 0.85465 0.79999 0.78370 0.77547 1.19034 1.20810 1.20576 1.21990 0.88426 0.96307 1.00301 1.21951 1.01140 0.96077 0.95985 0.93109 0.87737 0.93443 0.94022 0.92485 0.88412 0.89797 0.89841 0.96993 0.90822 0.92168 0.95086 0.94702 0.92957 0.96595 0.90437 0.89372 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.05 113.37 1.14 1.60 16 2 O -0.41 -10.96 9.49 -126.22 -1.20 -12.16 16 3 C 0.27 8.24 0.63 30.67 0.02 8.26 16 4 O -0.41 -12.53 8.38 -126.22 -1.06 -13.58 16 5 C 0.03 0.60 10.07 113.37 1.14 1.75 16 6 C -0.12 -3.83 5.05 30.65 0.15 -3.68 16 7 C 0.08 3.11 5.07 86.33 0.44 3.55 16 8 N -0.54 -23.60 4.52 -875.48 -3.96 -27.55 16 9 C 0.22 11.32 2.06 44.17 0.09 11.41 16 10 H -0.04 -2.46 8.14 -2.38 -0.02 -2.48 16 11 C -0.12 -6.02 8.75 71.98 0.63 -5.39 16 12 C -0.52 -28.74 7.86 25.60 0.20 -28.54 16 13 H 0.06 3.36 6.40 -2.91 -0.02 3.35 16 14 C 0.01 0.59 5.30 84.65 0.45 1.04 16 15 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 16 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 C 0.06 2.19 5.08 86.33 0.44 2.63 16 21 C -0.11 -3.46 4.89 30.65 0.15 -3.31 16 22 H 0.05 0.95 6.84 -2.39 -0.02 0.93 16 23 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 0.95 6.97 -2.39 -0.02 0.93 16 25 H 0.04 1.02 6.76 -2.39 -0.02 1.00 16 26 H 0.06 1.23 6.93 -2.39 -0.02 1.21 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 2.43 6.65 -2.39 -0.02 2.42 16 30 H 0.01 0.51 7.76 -2.39 -0.02 0.49 16 31 H 0.07 3.23 6.02 -2.39 -0.01 3.22 16 32 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 33 H 0.03 1.35 6.28 -2.39 -0.01 1.34 16 34 H 0.03 1.68 8.14 -2.38 -0.02 1.67 16 35 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.02 0.65 7.76 -2.39 -0.02 0.63 16 37 H 0.08 2.87 6.01 -2.38 -0.01 2.85 16 38 H 0.09 2.30 6.87 -2.39 -0.02 2.28 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.47 293.86 1.93 -60.54 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.02 Total: 10.89 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.85 Total: -10.67 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.71 Total: -80.91 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -2.25 Total: -25.74 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.47 1.93 -60.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108327168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.560 kcal (2) G-P(sol) polarization free energy of solvation -62.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds