Wall clock time and date at job start Mon Mar 30 2020 04:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99851 * 2 1 4 4 O 1.42901 * 109.52646 * 302.68822 * 3 2 1 5 5 C 1.42899 * 113.99629 * 303.71761 * 4 3 2 6 6 C 1.53115 * 109.52215 * 182.49761 * 3 2 1 7 7 C 1.53035 * 109.28069 * 182.44467 * 6 3 2 8 8 N 1.46848 * 109.52683 * 59.17650 * 7 6 3 9 9 C 1.46891 * 111.00184 * 174.16171 * 8 7 6 10 10 C 1.52999 * 109.47528 * 314.21418 * 9 8 7 11 11 C 1.50698 * 109.47440 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99847 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00257 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99484 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00196 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47084 * 59.99334 * 15 13 11 17 17 H 1.48497 * 109.47205 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46831 * 299.99733 * 15 13 11 19 19 C 1.46847 * 111.19746 * 298.26395 * 8 7 6 20 20 C 1.53039 * 109.52536 * 61.73788 * 19 8 7 21 21 H 1.09001 * 109.47090 * 294.28654 * 1 2 3 22 22 H 1.08998 * 109.47395 * 174.28296 * 1 2 3 23 23 H 1.09005 * 109.47077 * 54.27935 * 1 2 3 24 24 H 1.09008 * 109.46816 * 174.05953 * 5 4 3 25 25 H 1.09006 * 109.46769 * 294.05405 * 5 4 3 26 26 H 1.08999 * 109.47760 * 54.05434 * 5 4 3 27 27 H 1.09005 * 109.50276 * 302.37943 * 6 3 2 28 28 H 1.09000 * 109.50491 * 62.50030 * 6 3 2 29 29 H 1.09002 * 109.45805 * 299.16182 * 7 6 3 30 30 H 1.08998 * 109.46640 * 179.19352 * 7 6 3 31 31 H 1.09008 * 109.47140 * 74.21110 * 9 8 7 32 32 H 1.08998 * 109.47288 * 194.20719 * 9 8 7 33 33 H 1.09008 * 109.46658 * 299.99987 * 10 9 8 34 34 H 1.08998 * 109.47406 * 59.99374 * 10 9 8 35 35 H 0.97005 * 119.99454 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.46094 * 301.72561 * 19 8 7 37 37 H 1.09002 * 109.46118 * 181.75652 * 19 8 7 38 38 H 1.09002 * 109.50095 * 180.88159 * 20 19 8 39 39 H 1.08993 * 109.50352 * 60.76203 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.5400 2.0377 -1.1335 5 6 1.7864 1.3930 -2.3848 6 6 3.5354 1.1866 -0.0629 7 6 4.1543 2.5848 -0.0011 8 7 3.7480 3.2467 1.2452 9 6 4.4337 4.5361 1.4043 10 6 5.9210 4.3652 1.0888 11 6 6.6245 5.6878 1.2526 12 1 6.0665 6.5628 1.5514 13 6 7.9803 5.7810 1.0200 14 7 8.6597 4.7154 0.6557 15 14 8.8522 7.4205 1.2223 16 1 8.6944 7.8959 2.6203 17 1 10.2958 7.2546 0.9163 18 1 8.2594 8.4145 0.2917 19 6 2.2905 3.4146 1.3065 20 6 1.6160 2.0411 1.2838 21 1 -0.3633 0.4227 0.9367 22 1 -0.3634 -1.0225 -0.1024 23 1 -0.3633 0.6000 -0.8344 24 1 1.3084 1.9582 -3.1850 25 1 2.8605 1.3465 -2.5642 26 1 1.3782 0.3826 -2.3597 27 1 3.8894 0.5944 0.7811 28 1 3.8245 0.7015 -0.9952 29 1 3.8108 3.1719 -0.8528 30 1 5.2408 2.5028 -0.0312 31 1 3.9988 5.2656 0.7209 32 1 4.3176 4.8852 2.4303 33 1 6.3558 3.6357 1.7722 34 1 6.0371 4.0161 0.0628 35 1 9.6137 4.7809 0.4924 36 1 1.9557 3.9978 0.4487 37 1 2.0233 3.9353 2.2261 38 1 0.5336 2.1667 1.3135 39 1 1.9397 1.4624 2.1488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108327174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:47 Heat of formation + Delta-G solvation = -116.107911 kcal Electronic energy + Delta-G solvation = -18730.442403 eV Core-core repulsion = 15865.156187 eV Total energy + Delta-G solvation = -2865.286216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31592 -38.74511 -36.91495 -35.42945 -33.50220 -32.15355 -30.57344 -27.99106 -27.62072 -26.31598 -24.57046 -23.76016 -21.78799 -20.73513 -18.73555 -18.41859 -17.54305 -16.78481 -16.59332 -16.32376 -16.02827 -15.61317 -15.26328 -14.98021 -14.75225 -14.50870 -14.16474 -13.71336 -13.35104 -13.32162 -13.08466 -12.86311 -12.72085 -12.49602 -12.36279 -12.21638 -12.01453 -11.84947 -11.53008 -11.24983 -11.24386 -10.90981 -10.68974 -10.51772 -9.21379 -8.19576 -6.30689 1.40903 1.44003 1.51893 2.40877 2.49904 2.75980 3.05287 3.13943 3.67735 3.69751 4.10467 4.25111 4.33665 4.41748 4.45348 4.48218 4.53164 4.56240 4.57433 4.59659 4.64000 4.78234 4.82287 4.86218 4.93263 4.95512 5.04313 5.06952 5.19109 5.44922 5.59982 5.66145 5.78070 6.06205 6.27231 6.31886 6.41550 6.85229 7.38196 8.92203 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.048315 B = 0.004853 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.386464 B = 5768.574259 C = 5942.596804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.271 3.729 4 O -0.405 6.405 5 C 0.025 3.975 6 C -0.120 4.120 7 C 0.065 3.935 8 N -0.546 5.546 9 C 0.078 3.922 10 C 0.030 3.970 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.060 3.940 20 C -0.116 4.116 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.068 0.932 33 H -0.005 1.005 34 H 0.000 1.000 35 H 0.264 0.736 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 -7.922 -2.704 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.195 3.805 4 O -0.326 6.326 5 C -0.071 4.071 6 C -0.158 4.158 7 C -0.063 4.063 8 N -0.271 5.271 9 C -0.049 4.049 10 C -0.007 4.007 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.068 4.068 20 C -0.154 4.154 21 H 0.072 0.928 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.013 0.987 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.704 -8.272 -2.340 18.786 hybrid contribution 0.600 1.158 -0.776 1.517 sum -16.104 -7.114 -3.115 17.879 Atomic orbital electron populations 1.22890 0.79427 1.03703 1.01225 1.88016 1.22004 1.28493 1.94346 1.22707 0.91354 0.79735 0.86742 1.88009 1.81436 1.47789 1.15381 1.22827 1.00755 0.98572 0.84952 1.21880 0.92909 0.97117 1.03864 1.21926 1.00091 0.93855 0.90394 1.62076 1.06713 1.22870 1.35431 1.21984 0.94771 0.88290 0.99871 1.19064 0.90826 0.95702 0.95137 1.21592 0.94105 0.96180 1.46597 0.92221 1.25935 0.98432 1.00489 0.94620 1.70096 1.08419 1.30888 1.47651 0.85496 0.77149 0.79258 0.79109 1.19126 1.20781 1.19263 1.22026 0.86680 0.96708 1.01380 1.21974 1.01574 0.96095 0.95732 0.92842 0.87943 0.93331 0.88220 0.94208 0.92566 0.89805 0.90047 0.95623 0.91320 0.96321 0.91383 0.98658 0.98141 0.92743 0.95052 0.89449 0.88790 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.05 113.37 1.14 1.55 16 2 O -0.41 -10.11 9.49 -126.22 -1.20 -11.31 16 3 C 0.27 7.34 0.63 30.67 0.02 7.36 16 4 O -0.40 -11.05 8.38 -126.22 -1.06 -12.11 16 5 C 0.02 0.54 10.08 113.37 1.14 1.69 16 6 C -0.12 -3.66 5.05 30.64 0.15 -3.51 16 7 C 0.07 2.44 4.72 86.32 0.41 2.85 16 8 N -0.55 -20.58 4.81 -896.37 -4.31 -24.89 16 9 C 0.08 3.42 5.21 86.30 0.45 3.87 16 10 C 0.03 1.62 4.22 29.85 0.13 1.74 16 11 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 15 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.06 1.82 5.29 86.33 0.46 2.27 16 20 C -0.12 -2.95 4.89 30.65 0.15 -2.80 16 21 H 0.05 0.85 6.84 -2.39 -0.02 0.83 16 22 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 0.86 6.98 -2.38 -0.02 0.84 16 24 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.04 0.92 6.76 -2.38 -0.02 0.91 16 26 H 0.06 1.13 6.94 -2.39 -0.02 1.11 16 27 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.08 2.31 6.65 -2.39 -0.02 2.30 16 29 H 0.03 0.99 7.76 -2.39 -0.02 0.97 16 30 H 0.07 2.97 5.81 -2.39 -0.01 2.95 16 31 H 0.02 0.81 8.08 -2.38 -0.02 0.79 16 32 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.00 -0.30 8.14 -2.38 -0.02 -0.31 16 34 H 0.00 0.02 6.21 -2.39 -0.01 0.01 16 35 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 36 H 0.03 1.00 7.76 -2.38 -0.02 0.98 16 37 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 38 H 0.09 1.97 6.87 -2.39 -0.02 1.96 16 39 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -65.46 301.20 1.50 -63.97 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.01 Total: 10.12 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.74 Total: -15.61 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -4.02 Total: -81.57 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -2.26 Total: -23.42 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.46 1.50 -63.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108327174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.142 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds