Wall clock time and date at job start Mon Mar 30 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00265 * 2 1 4 4 H 1.48495 * 109.47067 * 270.00087 * 3 2 1 5 5 H 1.48497 * 109.47004 * 29.99888 * 3 2 1 6 6 H 1.48503 * 109.46915 * 150.00023 * 3 2 1 7 7 C 1.37884 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99840 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47163 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47691 * 179.97438 * 10 9 7 12 12 N 1.40087 * 126.03655 * 270.00526 * 11 10 9 13 13 C 1.30837 * 108.22509 * 179.97438 * 12 11 10 14 14 C 1.39855 * 108.22132 * 359.76245 * 13 12 11 15 15 C 1.34985 * 126.03733 * 89.99554 * 11 10 9 16 16 Br 1.89100 * 126.13598 * 359.97438 * 15 11 10 17 17 H 0.97003 * 120.00176 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.47778 * 60.00064 * 9 7 2 19 19 H 1.09000 * 109.47525 * 299.99829 * 9 7 2 20 20 H 1.09005 * 109.46770 * 59.99742 * 10 9 7 21 21 H 1.09005 * 109.47078 * 300.00378 * 10 9 7 22 22 H 1.08000 * 125.88963 * 179.97438 * 13 12 11 23 23 H 1.08008 * 126.05200 * 180.27794 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5126 -4.9309 0.0001 12 7 1.1008 -5.6442 1.1332 13 6 0.4774 -6.7228 0.7335 14 6 0.4670 -6.7290 -0.6650 15 6 1.1151 -5.6189 -1.0911 16 35 1.4032 -5.1176 -2.8916 17 1 -0.4850 0.8401 -0.0004 18 1 0.6239 -2.5568 -0.8902 19 1 0.6246 -2.5571 0.8897 20 1 2.8717 -3.6044 0.8895 21 1 2.8718 -3.6044 -0.8905 22 1 0.0426 -7.4765 1.3733 23 1 0.0227 -7.4864 -1.2940 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108330150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:05 Heat of formation + Delta-G solvation = 68.797021 kcal Electronic energy + Delta-G solvation = -10357.033181 eV Core-core repulsion = 8253.121329 eV Total energy + Delta-G solvation = -2103.911852 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 243.991 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81005 -34.42492 -32.44419 -31.72127 -29.08085 -28.68771 -25.03261 -21.87544 -20.82556 -19.80741 -16.96048 -16.04463 -14.89139 -14.37468 -14.24141 -13.59825 -12.86028 -12.57030 -12.36812 -11.54982 -11.06603 -10.96933 -10.81745 -10.69310 -10.16659 -10.05204 -10.03306 -9.36470 -8.80042 -8.48039 -8.22958 -6.12174 -4.17675 1.44083 2.02741 3.00243 3.05184 3.26217 3.32895 3.35965 4.37028 4.94545 5.24199 5.47577 5.72331 5.93678 6.05872 6.08846 6.43681 6.83439 7.09498 7.47766 7.54237 7.83868 7.96417 8.17741 8.87235 9.47142 10.99043 Molecular weight = 243.99amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.008136 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.446164 B = 3440.723047 C = 4003.376196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.120 3.880 11 N -0.328 5.328 12 N -0.273 5.273 13 C 0.032 3.968 14 C -0.248 4.248 15 C 0.074 3.926 16 Br 0.013 6.987 17 H 0.263 0.737 18 H 0.026 0.974 19 H 0.027 0.973 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.185 0.815 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -12.374 -5.267 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.023 4.023 10 C 0.002 3.998 11 N -0.111 5.111 12 N -0.097 5.097 13 C -0.152 4.152 14 C -0.281 4.281 15 C -0.134 4.134 16 Br 0.095 6.905 17 H 0.073 0.927 18 H 0.044 0.956 19 H 0.045 0.955 20 H 0.108 0.892 21 H 0.105 0.895 22 H 0.202 0.798 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.541 -11.245 -4.895 12.525 hybrid contribution -0.018 0.383 -0.347 0.517 sum 2.523 -10.862 -5.243 12.323 Atomic orbital electron populations 1.69974 1.06150 1.26996 1.49534 1.24992 0.94871 0.99404 0.94793 0.86498 0.79786 0.82963 0.78225 1.20479 1.21076 1.19704 1.20956 0.93052 0.90123 1.52427 0.92180 1.19454 0.94049 0.90157 0.98686 1.22495 0.95581 0.78449 1.03324 1.49426 1.41481 1.18734 1.01496 1.77469 1.17807 1.06546 1.07899 1.23745 1.00160 0.96912 0.94396 1.21238 1.10863 1.00637 0.95326 1.22899 1.05475 0.96979 0.88067 1.96745 1.95905 1.92727 1.05127 0.92701 0.95592 0.95512 0.89228 0.89524 0.79816 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 14 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 14 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 14 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 14 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.78 14 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 14 9 C 0.01 0.37 5.30 -27.88 -0.15 0.23 14 10 C 0.12 2.54 6.18 -4.05 -0.03 2.52 14 11 N -0.33 -6.59 3.61 -59.58 -0.22 -6.81 14 12 N -0.27 -5.33 12.57 30.62 0.39 -4.94 14 13 C 0.03 0.50 12.02 -17.37 -0.21 0.30 14 14 C -0.25 -3.84 10.77 -39.98 -0.43 -4.27 14 15 C 0.07 1.32 7.34 -17.17 -0.13 1.20 14 16 Br 0.01 0.20 33.37 -68.01 -2.27 -2.07 14 17 H 0.26 7.37 8.31 -40.82 -0.34 7.03 14 18 H 0.03 0.71 8.14 -51.93 -0.42 0.29 14 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 14 20 H 0.09 1.84 8.14 -51.93 -0.42 1.41 14 21 H 0.09 1.70 7.66 -51.93 -0.40 1.30 14 22 H 0.18 2.06 8.06 -52.49 -0.42 1.64 14 23 H 0.15 1.85 8.06 -52.48 -0.42 1.42 14 LS Contribution 234.14 15.07 3.53 3.53 Total: -1.00 -30.34 234.14 -6.26 -36.60 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -2.05 Total: -3.64 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.35 Total: -13.16 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.91 Total: -37.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -2.27 Total: -2.07 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.34 -6.26 -36.60 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108330150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.397 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds