Wall clock time and date at job start Mon Mar 30 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 114.00226 * 2 1 4 4 C 1.53000 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47527 * 54.99685 * 4 3 2 6 6 O 1.42909 * 109.46909 * 294.99604 * 4 3 2 7 7 C 1.53005 * 109.47431 * 174.99843 * 4 3 2 8 8 N 1.46900 * 109.47203 * 186.79480 * 7 4 3 9 9 C 1.46903 * 111.00149 * 286.26833 * 8 7 4 10 10 C 1.50696 * 109.47385 * 171.73092 * 9 8 7 11 11 H 1.08002 * 119.99723 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00319 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99639 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00393 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47090 * 89.99871 * 14 12 10 16 16 H 1.48497 * 109.47483 * 210.00539 * 14 12 10 17 17 H 1.48508 * 109.47026 * 330.00392 * 14 12 10 18 18 C 1.46901 * 111.00062 * 162.31074 * 8 7 4 19 19 C 1.52997 * 109.47138 * 287.97161 * 18 8 7 20 20 C 1.52999 * 117.49797 * 116.01847 * 19 18 8 21 21 C 1.53000 * 117.49742 * 184.67822 * 19 18 8 22 22 H 1.09005 * 109.46593 * 60.00152 * 1 2 3 23 23 H 1.08998 * 109.47643 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46906 * 300.00753 * 1 2 3 25 25 H 1.08997 * 109.47561 * 59.99836 * 3 2 1 26 26 H 1.09002 * 109.47456 * 299.99436 * 3 2 1 27 27 H 0.96698 * 113.99789 * 299.99884 * 6 4 3 28 28 H 1.08997 * 109.46900 * 66.79530 * 7 4 3 29 29 H 1.08992 * 109.47093 * 306.79506 * 7 4 3 30 30 H 1.08999 * 109.46843 * 291.73199 * 9 8 7 31 31 H 1.09000 * 109.47047 * 51.73022 * 9 8 7 32 32 H 0.97003 * 119.99536 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.46949 * 167.97040 * 18 8 7 34 34 H 1.09001 * 109.46938 * 47.97057 * 18 8 7 35 35 H 1.09000 * 115.55265 * 330.35317 * 19 18 8 36 36 H 1.09004 * 117.50301 * 215.00354 * 20 19 18 37 37 H 1.08996 * 117.49923 * 0.02562 * 20 19 18 38 38 H 1.08994 * 117.49978 * 359.97438 * 21 19 18 39 39 H 1.08995 * 117.49610 * 145.00155 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8509 0.5683 -0.8427 6 8 3.9658 0.5791 1.2202 7 6 4.1574 2.5768 -0.1264 8 7 5.6118 2.4504 -0.2905 9 6 6.2537 2.0728 0.9757 10 6 7.7058 1.7554 0.7278 11 1 8.1112 1.8266 -0.2707 12 6 8.5168 1.3742 1.7755 13 7 8.0229 1.2870 2.9913 14 14 10.3167 0.9800 1.4681 15 1 11.1264 2.2159 1.6167 16 1 10.7763 -0.0341 2.4507 17 1 10.4782 0.4449 0.0922 18 6 6.1909 3.6900 -0.8253 19 6 5.8027 3.8406 -2.2975 20 6 4.9218 5.0325 -2.6775 21 6 6.4016 5.0184 -3.0690 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.6887 1.8463 0.8899 26 1 1.6888 1.8463 -0.8900 27 1 3.7192 1.0745 2.0132 28 1 3.9421 3.1535 0.7731 29 1 3.7368 3.0856 -0.9936 30 1 6.1779 2.8995 1.6821 31 1 5.7553 1.1956 1.3883 32 1 8.5935 1.0184 3.7284 33 1 7.2767 3.6510 -0.7379 34 1 5.8113 4.5415 -0.2605 35 1 5.6499 2.9083 -2.8412 36 1 4.1894 4.8843 -3.4711 37 1 4.6192 5.7095 -1.8787 38 1 7.0717 5.6861 -2.5277 39 1 6.6427 4.8609 -4.1202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127317944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:36 Heat of formation + Delta-G solvation = -66.171302 kcal Electronic energy + Delta-G solvation = -18259.947358 eV Core-core repulsion = 15396.826557 eV Total energy + Delta-G solvation = -2863.120802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.65449 -37.61844 -36.40794 -34.59628 -32.40028 -30.35536 -27.38344 -27.10812 -25.57570 -23.59187 -22.18604 -21.45924 -20.61134 -19.70735 -16.73016 -16.32900 -16.13242 -15.87369 -15.34091 -14.91475 -14.73890 -14.22905 -13.94956 -13.55723 -13.36420 -12.71134 -12.26791 -11.94472 -11.72053 -11.59860 -11.46140 -11.31027 -11.27095 -10.83742 -10.64651 -10.47562 -10.36575 -10.09219 -9.83716 -9.67009 -9.49382 -9.35389 -8.75470 -8.24934 -7.18813 -5.91783 -3.90415 3.37804 3.44267 3.49020 3.72954 4.11313 4.51280 4.79906 4.86817 5.07118 5.20314 5.24019 5.25292 5.33531 5.36747 5.44639 5.50509 5.58183 5.58785 5.68656 5.77058 5.82427 5.91168 6.05601 6.12415 6.31046 6.32110 6.49004 6.59022 6.83770 7.18900 7.44459 7.54086 7.90821 8.24385 8.29388 8.34347 8.66426 9.16405 9.71533 11.19357 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.007531 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.582992 B = 3717.153231 C = 5303.684166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.031 3.969 4 C 0.117 3.883 5 H 0.109 0.891 6 O -0.533 6.533 7 C 0.029 3.971 8 N -0.526 5.526 9 C 0.171 3.829 10 C -0.504 4.504 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.089 3.911 19 C -0.133 4.133 20 C -0.193 4.193 21 C -0.183 4.183 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.366 0.634 28 H 0.026 0.974 29 H 0.070 0.930 30 H -0.020 1.020 31 H 0.077 0.923 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.018 0.982 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 4.633 -7.485 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.047 4.047 4 C 0.057 3.943 5 H 0.127 0.873 6 O -0.337 6.337 7 C -0.100 4.100 8 N -0.250 5.250 9 C 0.047 3.953 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.039 4.039 19 C -0.152 4.152 20 C -0.230 4.230 21 C -0.221 4.221 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.213 0.787 28 H 0.044 0.956 29 H 0.088 0.912 30 H -0.002 1.002 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.036 0.964 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.838 3.588 -8.038 14.752 hybrid contribution 0.310 1.267 0.821 1.541 sum -11.528 4.855 -7.217 14.441 Atomic orbital electron populations 1.22732 0.81826 1.02521 0.99558 1.87993 1.18908 1.27573 1.95265 1.23373 0.96164 0.84903 1.00224 1.21895 0.88076 0.94865 0.89430 0.87313 1.86771 1.79792 1.52376 1.14728 1.22588 0.92303 0.95339 0.99782 1.62042 1.00202 1.30351 1.32433 1.20272 0.94737 0.96835 0.83450 1.21180 0.94063 1.44826 0.94185 0.92164 1.24937 0.98541 0.95944 0.95133 1.69957 1.35719 1.48681 0.99423 0.86572 0.85283 0.77943 0.78039 1.20972 1.21338 1.19847 1.21623 1.01392 0.90629 0.90259 1.22497 1.02291 0.92839 0.97580 1.23034 0.93546 1.03055 1.03388 1.22900 0.95826 1.02896 1.00464 0.94432 0.89794 0.94368 0.93413 0.92853 0.78730 0.95600 0.91192 1.00178 0.90567 0.93155 0.89027 0.96361 0.87366 0.89558 0.89452 0.89079 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.66 10.67 -40.08 -0.43 -6.09 16 3 C 0.03 0.42 5.57 37.16 0.21 0.63 16 4 C 0.12 1.99 3.45 -26.73 -0.09 1.90 16 5 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 6 O -0.53 -10.52 10.27 -40.08 -0.41 -10.93 16 7 C 0.03 0.50 4.62 -3.82 -0.02 0.49 16 8 N -0.53 -11.15 4.41 -236.07 -1.04 -12.19 16 9 C 0.17 4.44 4.48 -4.98 -0.02 4.42 16 10 C -0.50 -14.34 8.27 -34.44 -0.28 -14.63 16 11 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 14 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.09 1.72 5.09 -3.83 -0.02 1.70 16 19 C -0.13 -2.10 4.97 -90.62 -0.45 -2.55 16 20 C -0.19 -2.50 10.02 -26.69 -0.27 -2.77 16 21 C -0.18 -2.46 10.25 -26.69 -0.27 -2.74 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.37 6.17 9.03 45.56 0.41 6.58 16 28 H 0.03 0.44 8.03 -51.93 -0.42 0.03 16 29 H 0.07 1.05 7.01 -51.93 -0.36 0.69 16 30 H -0.02 -0.54 8.13 -51.93 -0.42 -0.97 16 31 H 0.08 2.10 4.99 -51.93 -0.26 1.84 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.99 6.45 -51.93 -0.34 1.66 16 34 H 0.02 0.35 7.79 -51.93 -0.40 -0.06 16 35 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.11 8.03 -51.93 -0.42 0.70 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -31.83 319.02 -7.51 -39.34 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.94 Total: 4.89 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.21 Total: -10.63 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.30 Total: -38.49 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.84 Total: -17.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.83 -7.51 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127317944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.832 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds