Wall clock time and date at job start Mon Mar 30 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 114.00226 * 2 1 4 4 C 1.53000 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47527 * 54.99685 * 4 3 2 6 6 O 1.42909 * 109.46909 * 294.99604 * 4 3 2 7 7 C 1.53005 * 109.47431 * 174.99843 * 4 3 2 8 8 N 1.46900 * 109.47203 * 186.79480 * 7 4 3 9 9 C 1.46903 * 111.00149 * 286.26833 * 8 7 4 10 10 C 1.50696 * 109.47385 * 171.73092 * 9 8 7 11 11 H 1.08002 * 119.99723 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00319 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99639 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00393 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47090 * 89.99871 * 14 12 10 16 16 H 1.48497 * 109.47483 * 210.00539 * 14 12 10 17 17 H 1.48508 * 109.47026 * 330.00392 * 14 12 10 18 18 C 1.46901 * 111.00062 * 162.31074 * 8 7 4 19 19 C 1.52997 * 109.47138 * 287.97161 * 18 8 7 20 20 C 1.52999 * 117.49797 * 116.01847 * 19 18 8 21 21 C 1.53000 * 117.49742 * 184.67822 * 19 18 8 22 22 H 1.09005 * 109.46593 * 60.00152 * 1 2 3 23 23 H 1.08998 * 109.47643 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46906 * 300.00753 * 1 2 3 25 25 H 1.08997 * 109.47561 * 59.99836 * 3 2 1 26 26 H 1.09002 * 109.47456 * 299.99436 * 3 2 1 27 27 H 0.96698 * 113.99789 * 299.99884 * 6 4 3 28 28 H 1.08997 * 109.46900 * 66.79530 * 7 4 3 29 29 H 1.08992 * 109.47093 * 306.79506 * 7 4 3 30 30 H 1.08999 * 109.46843 * 291.73199 * 9 8 7 31 31 H 1.09000 * 109.47047 * 51.73022 * 9 8 7 32 32 H 0.97003 * 119.99536 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.46949 * 167.97040 * 18 8 7 34 34 H 1.09001 * 109.46938 * 47.97057 * 18 8 7 35 35 H 1.09000 * 115.55265 * 330.35317 * 19 18 8 36 36 H 1.09004 * 117.50301 * 215.00354 * 20 19 18 37 37 H 1.08996 * 117.49923 * 0.02562 * 20 19 18 38 38 H 1.08994 * 117.49978 * 359.97438 * 21 19 18 39 39 H 1.08995 * 117.49610 * 145.00155 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8509 0.5683 -0.8427 6 8 3.9658 0.5791 1.2202 7 6 4.1574 2.5768 -0.1264 8 7 5.6118 2.4504 -0.2905 9 6 6.2537 2.0728 0.9757 10 6 7.7058 1.7554 0.7278 11 1 8.1112 1.8266 -0.2707 12 6 8.5168 1.3742 1.7755 13 7 8.0229 1.2870 2.9913 14 14 10.3167 0.9800 1.4681 15 1 11.1264 2.2159 1.6167 16 1 10.7763 -0.0341 2.4507 17 1 10.4782 0.4449 0.0922 18 6 6.1909 3.6900 -0.8253 19 6 5.8027 3.8406 -2.2975 20 6 4.9218 5.0325 -2.6775 21 6 6.4016 5.0184 -3.0690 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.6887 1.8463 0.8899 26 1 1.6888 1.8463 -0.8900 27 1 3.7192 1.0745 2.0132 28 1 3.9421 3.1535 0.7731 29 1 3.7368 3.0856 -0.9936 30 1 6.1779 2.8995 1.6821 31 1 5.7553 1.1956 1.3883 32 1 8.5935 1.0184 3.7284 33 1 7.2767 3.6510 -0.7379 34 1 5.8113 4.5415 -0.2605 35 1 5.6499 2.9083 -2.8412 36 1 4.1894 4.8843 -3.4711 37 1 4.6192 5.7095 -1.8787 38 1 7.0717 5.6861 -2.5277 39 1 6.6427 4.8609 -4.1202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127317944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:35 Heat of formation + Delta-G solvation = -89.997047 kcal Electronic energy + Delta-G solvation = -18260.980520 eV Core-core repulsion = 15396.826557 eV Total energy + Delta-G solvation = -2864.153964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02164 -38.81751 -37.64925 -36.18797 -34.49774 -31.76582 -29.22603 -28.32473 -26.82893 -25.24597 -23.28341 -22.94480 -22.15086 -21.10502 -18.56013 -17.77369 -17.44971 -17.00200 -16.82998 -16.53118 -15.96285 -15.81360 -15.19083 -15.03357 -14.82650 -14.31248 -13.77325 -13.46216 -13.35815 -13.02060 -12.85609 -12.67844 -12.52826 -12.39563 -12.30652 -12.09445 -12.00255 -11.60829 -11.36566 -11.11768 -10.73929 -10.68243 -10.61834 -10.23395 -8.92886 -8.13611 -6.19853 1.39957 1.42147 1.53212 2.43276 2.66783 2.98314 3.18905 3.39939 3.59736 3.94748 4.09619 4.13013 4.14114 4.21806 4.31489 4.38788 4.48375 4.53978 4.57571 4.59797 4.70221 4.81423 4.86174 4.90927 4.97530 5.08702 5.15700 5.31336 5.32114 5.45004 5.63514 5.71776 6.19122 6.25650 6.48165 6.74685 6.89801 6.96504 7.46900 8.97373 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.007531 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.582992 B = 3717.153231 C = 5303.684166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.041 3.959 4 C 0.116 3.884 5 H 0.088 0.912 6 O -0.563 6.563 7 C 0.035 3.965 8 N -0.537 5.537 9 C 0.187 3.813 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.961 3.039 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.094 3.906 19 C -0.155 4.155 20 C -0.168 4.168 21 C -0.176 4.176 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.374 0.626 28 H 0.027 0.973 29 H 0.099 0.901 30 H -0.051 1.051 31 H 0.060 0.940 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 5.558 -9.107 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.036 4.036 4 C 0.057 3.943 5 H 0.106 0.894 6 O -0.369 6.369 7 C -0.094 4.094 8 N -0.260 5.260 9 C 0.061 3.939 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.034 4.034 19 C -0.174 4.174 20 C -0.205 4.205 21 C -0.213 4.213 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.222 0.778 28 H 0.046 0.954 29 H 0.117 0.883 30 H -0.033 1.033 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.830 4.530 -9.680 16.698 hybrid contribution 0.548 0.991 1.307 1.729 sum -12.282 5.521 -8.373 15.856 Atomic orbital electron populations 1.22950 0.79487 1.03725 1.00980 1.87935 1.21507 1.28319 1.95584 1.23200 0.93220 0.84993 1.02172 1.21911 0.90855 0.93861 0.87678 0.89417 1.86707 1.80677 1.53452 1.16048 1.22621 0.89694 0.95982 1.01067 1.61946 1.02505 1.31823 1.29760 1.19907 0.94034 0.94984 0.84931 1.21515 0.95660 1.44724 0.94002 0.92739 1.25807 1.03185 0.95758 0.94864 1.70081 1.37392 1.49500 1.00253 0.85505 0.79768 0.78046 0.78028 1.19848 1.20823 1.19318 1.21522 0.99283 0.89679 0.92920 1.22214 1.06069 0.94022 0.95074 1.23118 0.93637 1.00143 1.03622 1.23009 0.96519 1.00799 1.01023 0.92618 0.88865 0.93235 0.91892 0.90250 0.77770 0.95431 0.88259 1.03313 0.92272 0.93002 0.92474 0.96368 0.87989 0.87123 0.89021 0.89294 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -11.82 10.67 -144.34 -1.54 -13.36 16 3 C 0.04 1.05 5.57 71.98 0.40 1.45 16 4 C 0.12 3.94 3.45 30.60 0.11 4.04 16 5 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 6 O -0.56 -22.96 10.27 -144.34 -1.48 -24.44 16 7 C 0.04 1.18 4.62 86.31 0.40 1.58 16 8 N -0.54 -23.23 4.41 -900.80 -3.97 -27.20 16 9 C 0.19 10.11 4.48 85.55 0.38 10.49 16 10 C -0.52 -30.60 8.27 25.60 0.21 -30.39 16 11 H 0.05 3.19 7.13 -2.91 -0.02 3.17 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 14 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 C 0.09 3.68 5.09 86.30 0.44 4.12 16 19 C -0.16 -4.67 4.97 -10.80 -0.05 -4.72 16 20 C -0.17 -3.80 10.02 30.62 0.31 -3.50 16 21 C -0.18 -4.31 10.25 30.62 0.31 -3.99 16 22 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.37 13.15 9.03 -74.06 -0.67 12.48 16 28 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 29 H 0.10 2.76 7.01 -2.39 -0.02 2.75 16 30 H -0.05 -2.98 8.13 -2.39 -0.02 -3.00 16 31 H 0.06 3.41 4.99 -2.39 -0.01 3.40 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.06 2.58 6.45 -2.39 -0.02 2.57 16 34 H 0.02 0.69 7.79 -2.39 -0.02 0.68 16 35 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 2.03 8.03 -2.39 -0.02 2.01 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -70.52 319.02 -0.12 -70.64 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.35 Total: 22.17 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.22 Total: -18.66 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.69 Total: -84.42 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -3.02 Total: -37.80 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.52 -0.12 -70.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127317944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.361 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds