Wall clock time and date at job start Mon Mar 30 2020 04:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46789 * 2 1 4 4 C 1.34906 * 116.99687 * 179.97438 * 3 2 1 5 5 O 1.21607 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.46730 * 119.99741 * 180.02562 * 4 3 2 7 7 N 1.31578 * 126.28348 * 359.97438 * 6 4 3 8 8 N 1.28674 * 109.33754 * 180.02562 * 7 6 4 9 9 C 1.32014 * 109.35600 * 0.02562 * 8 7 6 10 10 S 1.76199 * 126.26901 * 179.97438 * 9 8 7 11 11 C 1.76205 * 99.99528 * 0.02562 * 10 9 8 12 12 H 1.07999 * 120.00301 * 0.02562 * 11 10 9 13 13 C 1.38899 * 119.99732 * 179.97438 * 11 10 9 14 14 N 1.31458 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46959 * 60.00315 * 15 13 11 17 17 H 1.48494 * 109.46712 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46894 * 300.00322 * 15 13 11 19 19 O 1.34464 * 107.47073 * 0.02562 * 9 8 7 20 20 H 1.09002 * 109.47317 * 299.99941 * 1 2 3 21 21 H 1.09005 * 109.47251 * 60.00116 * 1 2 3 22 22 H 1.08997 * 109.46871 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46994 * 240.00373 * 2 1 3 24 24 H 1.08992 * 109.46696 * 120.00226 * 2 1 3 25 25 H 0.97003 * 119.99980 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3437 1.5241 0.0005 5 8 4.0845 0.5597 0.0005 6 6 3.9045 2.8800 0.0011 7 7 3.2220 4.0049 0.0007 8 7 4.0389 4.9990 0.0010 9 6 5.2790 4.5462 0.0009 10 16 6.7454 5.5232 0.0006 11 6 6.0378 7.1369 0.0010 12 1 4.9643 7.2559 0.0018 13 6 6.8606 8.2559 0.0014 14 7 8.1671 8.1111 0.0009 15 14 6.1104 9.9667 0.0012 16 1 5.2701 10.1389 1.2134 17 1 7.1939 10.9822 0.0010 18 1 5.2710 10.1389 -1.2117 19 8 5.2183 3.2030 0.0001 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 8.7418 8.8926 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130942486.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:56 Heat of formation + Delta-G solvation = -49.262812 kcal Electronic energy + Delta-G solvation = -14588.840483 eV Core-core repulsion = 11696.280565 eV Total energy + Delta-G solvation = -2892.559918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.035 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.27295 -40.43364 -36.85768 -35.47415 -33.05231 -32.09679 -30.73913 -26.33105 -25.44479 -23.23784 -23.12993 -21.40117 -18.82166 -18.29252 -17.19783 -17.16127 -16.36278 -16.30088 -15.32828 -15.17801 -14.13362 -13.84419 -13.38207 -12.99090 -12.17862 -11.88088 -11.82930 -11.77710 -11.47569 -11.33806 -11.23130 -11.19141 -10.65588 -10.63086 -10.38438 -10.19871 -9.33294 -9.28455 -7.33415 -6.81986 -4.60710 0.81251 1.47113 2.25523 2.31872 3.06579 3.06933 3.12077 3.13991 3.70438 3.97036 4.43638 4.65169 4.72377 4.75287 4.79150 5.08247 5.34513 5.59518 5.63794 5.75282 5.75724 5.84275 6.18632 7.23540 7.55205 8.01455 8.67476 8.73087 10.24561 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.055924 B = 0.004871 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.554860 B = 5747.189054 C = 6227.297575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.324 6.324 4 C 0.584 3.416 5 O -0.492 6.492 6 C 0.049 3.951 7 N -0.180 5.180 8 N -0.312 5.312 9 C 0.145 3.855 10 S 0.265 5.735 11 C -0.565 4.565 12 H 0.114 0.886 13 C 0.084 3.916 14 N -0.864 5.864 15 Si 0.942 3.058 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.265 1.265 19 O -0.193 6.193 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 -9.691 0.001 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.240 6.240 4 C 0.425 3.575 5 O -0.377 6.377 6 C -0.164 4.164 7 N -0.040 5.040 8 N -0.172 5.172 9 C -0.162 4.162 10 S 0.503 5.497 11 C -0.712 4.712 12 H 0.132 0.868 13 C -0.128 4.128 14 N -0.497 5.497 15 Si 0.766 3.234 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.190 1.190 19 O -0.077 6.077 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.634 -9.421 -0.001 12.125 hybrid contribution -0.559 0.350 0.001 0.660 sum -8.193 -9.070 0.000 12.222 Atomic orbital electron populations 1.21816 0.92036 1.02984 1.03997 1.22810 0.95735 0.79809 1.02908 1.86204 1.21233 1.32608 1.83925 1.17967 0.81292 0.84466 0.73754 1.90929 1.60348 1.40797 1.45619 1.24451 0.79426 0.95060 1.17510 1.74560 1.27632 0.94783 1.07074 1.75346 0.96747 1.20800 1.24330 1.32060 1.04948 0.81022 0.98152 1.84065 0.90103 0.97195 1.78346 1.23544 0.98540 0.88699 1.60452 0.86844 1.25195 0.94615 1.00688 0.92310 1.69829 1.03115 1.32999 1.43757 0.85811 0.78763 0.78858 0.79942 1.18986 1.20408 1.18991 1.84975 1.26644 1.23760 1.72334 0.91180 0.91187 0.90050 0.91012 0.91011 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 15 2 C 0.06 0.65 6.10 37.16 0.23 0.88 15 3 O -0.32 -4.85 10.12 -41.06 -0.42 -5.27 15 4 C 0.58 10.41 7.93 34.16 0.27 10.68 15 5 O -0.49 -9.24 16.89 -22.40 -0.38 -9.62 15 6 C 0.05 1.01 8.21 -14.23 -0.12 0.89 15 7 N -0.18 -3.99 12.28 31.95 0.39 -3.60 15 8 N -0.31 -7.50 11.08 30.41 0.34 -7.16 15 9 C 0.15 3.39 8.52 52.84 0.45 3.84 15 10 S 0.26 6.26 21.90 -107.50 -2.35 3.90 15 11 C -0.56 -14.53 9.38 30.98 0.29 -14.24 15 12 H 0.11 2.97 6.92 -52.49 -0.36 2.61 15 13 C 0.08 2.10 5.49 -17.47 -0.10 2.01 15 14 N -0.86 -22.16 13.21 55.49 0.73 -21.43 15 15 Si 0.94 19.53 29.55 -169.99 -5.02 14.50 15 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 18 H -0.27 -5.47 7.11 56.52 0.40 -5.06 15 19 O -0.19 -4.28 10.91 -2.16 -0.02 -4.30 15 20 H 0.07 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15 23 H 0.07 0.71 8.13 -51.93 -0.42 0.29 15 24 H 0.07 0.71 8.13 -51.93 -0.42 0.29 15 25 H 0.28 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -28.21 259.06 -3.03 -31.24 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: -1.61 Total: -5.47 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 1.41 Total: 3.29 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 1.46 Total: -32.19 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.82 Total: -19.19 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -2.35 Total: 3.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.21 -3.03 -31.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130942486.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.022 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds