Wall clock time and date at job start Mon Mar 30 2020 04:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46789 * 2 1 4 4 C 1.34906 * 116.99687 * 179.97438 * 3 2 1 5 5 O 1.21607 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.46730 * 119.99741 * 180.02562 * 4 3 2 7 7 N 1.31578 * 126.28348 * 359.97438 * 6 4 3 8 8 N 1.28674 * 109.33754 * 180.02562 * 7 6 4 9 9 C 1.32014 * 109.35600 * 0.02562 * 8 7 6 10 10 S 1.76199 * 126.26901 * 179.97438 * 9 8 7 11 11 C 1.76205 * 99.99528 * 0.02562 * 10 9 8 12 12 H 1.07999 * 120.00301 * 0.02562 * 11 10 9 13 13 C 1.38899 * 119.99732 * 179.97438 * 11 10 9 14 14 N 1.31458 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46959 * 60.00315 * 15 13 11 17 17 H 1.48494 * 109.46712 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46894 * 300.00322 * 15 13 11 19 19 O 1.34464 * 107.47073 * 0.02562 * 9 8 7 20 20 H 1.09002 * 109.47317 * 299.99941 * 1 2 3 21 21 H 1.09005 * 109.47251 * 60.00116 * 1 2 3 22 22 H 1.08997 * 109.46871 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46994 * 240.00373 * 2 1 3 24 24 H 1.08992 * 109.46696 * 120.00226 * 2 1 3 25 25 H 0.97003 * 119.99980 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3437 1.5241 0.0005 5 8 4.0845 0.5597 0.0005 6 6 3.9045 2.8800 0.0011 7 7 3.2220 4.0049 0.0007 8 7 4.0389 4.9990 0.0010 9 6 5.2790 4.5462 0.0009 10 16 6.7454 5.5232 0.0006 11 6 6.0378 7.1369 0.0010 12 1 4.9643 7.2559 0.0018 13 6 6.8606 8.2559 0.0014 14 7 8.1671 8.1111 0.0009 15 14 6.1104 9.9667 0.0012 16 1 5.2701 10.1389 1.2134 17 1 7.1939 10.9822 0.0010 18 1 5.2710 10.1389 -1.2117 19 8 5.2183 3.2030 0.0001 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 8.7418 8.8926 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130942486.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:56 Heat of formation + Delta-G solvation = -70.546964 kcal Electronic energy + Delta-G solvation = -14589.763434 eV Core-core repulsion = 11696.280565 eV Total energy + Delta-G solvation = -2893.482868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.035 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.07446 -41.76868 -38.20672 -37.24678 -34.95080 -33.25959 -32.15239 -28.16559 -27.06571 -25.04983 -24.18099 -22.78625 -20.61112 -19.86065 -18.80806 -18.60193 -18.09144 -17.64060 -17.14357 -16.94199 -15.21729 -15.11378 -15.03139 -13.70506 -13.69762 -13.64197 -13.27267 -13.13509 -13.04534 -13.03824 -12.86590 -12.52949 -12.24311 -12.02292 -11.97352 -11.59811 -11.17653 -11.15394 -9.20184 -8.69226 -6.55761 -0.83566 -0.23402 0.61472 0.69230 1.37424 1.43932 1.48164 1.52216 1.99207 2.41317 2.76236 2.84899 2.91292 3.81433 3.93747 4.00029 4.00933 4.08400 4.32390 4.64846 4.93605 4.98095 5.30508 5.32632 6.05052 6.19198 6.77312 6.92992 8.38755 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.055924 B = 0.004871 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.554860 B = 5747.189054 C = 6227.297575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.322 6.322 4 C 0.593 3.407 5 O -0.498 6.498 6 C 0.065 3.935 7 N -0.193 5.193 8 N -0.332 5.332 9 C 0.145 3.855 10 S 0.256 5.744 11 C -0.590 4.590 12 H 0.103 0.897 13 C 0.045 3.955 14 N -0.891 5.891 15 Si 1.003 2.997 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.264 1.264 19 O -0.195 6.195 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -10.334 0.001 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.237 6.237 4 C 0.434 3.566 5 O -0.384 6.384 6 C -0.150 4.150 7 N -0.051 5.051 8 N -0.191 5.191 9 C -0.164 4.164 10 S 0.493 5.507 11 C -0.738 4.738 12 H 0.121 0.879 13 C -0.164 4.164 14 N -0.524 5.524 15 Si 0.824 3.176 16 H -0.188 1.188 17 H -0.189 1.189 18 H -0.188 1.188 19 O -0.079 6.079 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.130 0.870 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.919 -10.088 -0.001 13.465 hybrid contribution -0.303 0.308 0.001 0.432 sum -9.222 -9.780 0.000 13.442 Atomic orbital electron populations 1.21878 0.89530 1.04942 1.03906 1.23345 0.97581 0.77669 1.03919 1.86234 1.18997 1.35560 1.82947 1.17690 0.82356 0.82925 0.73635 1.90931 1.60970 1.40538 1.45991 1.25216 0.78828 0.96301 1.14622 1.74530 1.27420 0.94865 1.08326 1.75313 0.97187 1.21747 1.24881 1.31971 1.04723 0.81313 0.98381 1.83912 0.90284 0.96694 1.79788 1.23688 0.98314 0.89944 1.61804 0.87939 1.26050 0.94960 1.03956 0.91471 1.69877 1.04078 1.34309 1.44129 0.84916 0.78287 0.74625 0.79812 1.18802 1.18889 1.18813 1.84984 1.27531 1.23381 1.72000 0.91277 0.91284 0.86987 0.90027 0.90025 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 15 2 C 0.05 0.89 6.10 71.98 0.44 1.33 15 3 O -0.32 -9.00 10.12 -58.21 -0.59 -9.59 15 4 C 0.59 20.19 7.93 70.04 0.56 20.75 15 5 O -0.50 -17.81 16.89 22.41 0.38 -17.43 15 6 C 0.07 2.65 8.21 86.95 0.71 3.36 15 7 N -0.19 -8.48 12.28 -166.25 -2.04 -10.52 15 8 N -0.33 -16.03 11.08 -171.36 -1.90 -17.93 15 9 C 0.14 6.80 8.52 130.22 1.11 7.91 15 10 S 0.26 12.30 21.90 -56.49 -1.24 11.07 15 11 C -0.59 -30.73 9.38 67.98 0.64 -30.09 15 12 H 0.10 5.46 6.92 -2.91 -0.02 5.44 15 13 C 0.05 2.25 5.49 84.91 0.47 2.71 15 14 N -0.89 -45.65 13.21 21.66 0.29 -45.37 15 15 Si 1.00 39.51 29.55 68.60 2.03 41.54 15 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 17 H -0.26 -9.71 7.11 99.48 0.71 -9.01 15 18 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 19 O -0.20 -8.59 10.91 -9.66 -0.11 -8.70 15 20 H 0.07 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.07 0.89 8.14 -2.38 -0.02 0.87 15 22 H 0.11 0.75 8.14 -2.39 -0.02 0.73 15 23 H 0.08 1.39 8.13 -2.39 -0.02 1.37 15 24 H 0.08 1.39 8.13 -2.39 -0.02 1.37 15 25 H 0.29 13.66 8.31 -92.71 -0.77 12.89 15 Total: -1.00 -59.24 259.06 2.72 -56.53 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: 1.23 Total: -4.50 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 4.66 Total: 4.91 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -3.65 Total: -73.82 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.32 Total: -35.72 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 12.30 SS G_CDS: -1.24 Total: 11.07 kcal Total: -59.24 2.72 -56.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130942486.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.020 kcal (2) G-P(sol) polarization free energy of solvation -59.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds