Wall clock time and date at job start Mon Mar 30 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50695 * 109.47524 * 239.99670 * 2 1 3 5 5 H 1.08002 * 120.00420 * 239.99876 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99551 * 4 2 1 7 7 N 1.31511 * 119.99443 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47078 * 120.00263 * 8 6 4 11 11 H 1.48506 * 109.47479 * 240.00099 * 8 6 4 12 12 N 1.46903 * 109.47353 * 119.99172 * 2 1 3 13 13 C 1.47021 * 110.99699 * 58.95840 * 12 2 1 14 14 C 1.53091 * 109.25787 * 177.60843 * 13 12 2 15 15 H 1.08997 * 109.54025 * 296.89025 * 14 13 12 16 16 C 1.53002 * 109.50737 * 176.78516 * 14 13 12 17 17 O 1.42894 * 109.47350 * 175.21723 * 16 14 13 18 18 O 1.43019 * 109.26239 * 56.84783 * 14 13 12 19 19 C 1.43018 * 113.73588 * 301.32995 * 18 14 13 20 20 C 1.52997 * 109.50498 * 178.60171 * 19 18 14 21 21 C 1.52998 * 109.50760 * 298.69210 * 19 18 14 22 22 C 1.47017 * 110.99835 * 295.27941 * 12 2 1 23 23 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47060 * 300.00158 * 1 2 3 25 25 H 1.08996 * 109.46835 * 60.00529 * 1 2 3 26 26 H 0.97006 * 119.99378 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.50342 * 57.66831 * 13 12 2 28 28 H 1.09004 * 109.50426 * 297.54519 * 13 12 2 29 29 H 1.09000 * 109.46720 * 295.21863 * 16 14 13 30 30 H 1.09001 * 109.47423 * 55.21454 * 16 14 13 31 31 H 0.96700 * 114.00082 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.47153 * 180.08642 * 20 19 18 33 33 H 1.09001 * 109.46832 * 60.08833 * 20 19 18 34 34 H 1.09004 * 109.47261 * 300.08815 * 20 19 18 35 35 H 1.09001 * 109.46639 * 299.91224 * 21 19 18 36 36 H 1.08999 * 109.47295 * 59.90832 * 21 19 18 37 37 H 1.09001 * 109.47196 * 179.91467 * 21 19 18 38 38 H 1.09000 * 109.47282 * 62.43883 * 22 12 2 39 39 H 1.08993 * 109.54351 * 302.30100 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1457 -2.2878 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1876 -4.8165 12 7 2.0197 -0.6923 1.1995 13 6 1.5280 -2.0771 1.2462 14 6 2.1089 -2.7779 2.4771 15 1 3.1942 -2.8282 2.3898 16 6 1.5381 -4.1941 2.5756 17 8 2.1634 -4.8855 3.6586 18 8 1.7579 -2.0390 3.6502 19 6 2.2216 -0.6861 3.6386 20 6 1.7652 0.0213 4.9162 21 6 3.7497 -0.6704 3.5639 22 6 1.6428 0.0366 2.4193 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 0.7095 1.1615 -3.4845 27 1 1.8409 -2.6049 0.3453 28 1 0.4398 -2.0750 1.3082 29 1 0.4635 -4.1413 2.7502 30 1 1.7291 -4.7284 1.6449 31 1 1.8490 -5.7918 3.7805 32 1 2.1176 1.0528 4.9060 33 1 2.1764 -0.4946 5.7838 34 1 0.6765 0.0098 4.9688 35 1 4.1611 -1.1865 4.4314 36 1 4.0742 -1.1746 2.6537 37 1 4.1024 0.3609 3.5536 38 1 0.5563 0.0731 2.4998 39 1 2.0394 1.0509 2.3753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158655777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:15 Heat of formation + Delta-G solvation = -91.568178 kcal Electronic energy + Delta-G solvation = -19240.492419 eV Core-core repulsion = 16376.270327 eV Total energy + Delta-G solvation = -2864.222093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71800 -36.65530 -35.86854 -33.31390 -32.59245 -29.98216 -28.27230 -27.02331 -25.95147 -25.04283 -23.58668 -21.46660 -19.83102 -18.68271 -17.19701 -16.40460 -15.98372 -15.44071 -14.63292 -14.56122 -14.26185 -14.14353 -13.69052 -13.18519 -12.91954 -12.32580 -12.32003 -12.05995 -11.89575 -11.59730 -11.45432 -11.17443 -11.02212 -10.78593 -10.75353 -10.67891 -10.36943 -10.23567 -10.03162 -9.96192 -9.58352 -9.05781 -8.77825 -8.43211 -7.20654 -6.05261 -4.09477 3.26767 3.35017 3.38844 3.99626 4.26188 4.38757 4.93870 5.22661 5.27331 5.29523 5.38628 5.42652 5.53224 5.69732 5.73122 5.88644 5.93635 6.00163 6.04986 6.11695 6.17269 6.38508 6.40807 6.54749 6.56810 6.73497 6.76685 6.83473 7.08262 7.40909 7.65696 7.67856 7.75968 7.77820 8.05147 8.31714 8.52817 8.96184 9.55852 11.01870 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.007574 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.983846 B = 3696.002894 C = 4310.912546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.091 3.909 15 H 0.070 0.930 16 C 0.085 3.915 17 O -0.567 6.567 18 O -0.372 6.372 19 C 0.113 3.887 20 C -0.134 4.134 21 C -0.164 4.164 22 C 0.029 3.971 23 H 0.029 0.971 24 H 0.008 0.992 25 H 0.089 0.911 26 H 0.260 0.740 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.373 0.627 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 -5.681 10.549 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.249 5.249 13 C -0.093 4.093 14 C 0.033 3.967 15 H 0.088 0.912 16 C 0.007 3.993 17 O -0.371 6.371 18 O -0.292 6.292 19 C 0.074 3.926 20 C -0.192 4.192 21 C -0.221 4.221 22 C -0.100 4.100 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.293 -5.067 10.578 11.800 hybrid contribution -0.895 -0.721 -1.249 1.697 sum 0.398 -5.788 9.329 10.986 Atomic orbital electron populations 1.22395 1.00810 0.99309 1.00598 1.19321 0.89810 0.94591 0.85751 0.94096 1.21133 1.30632 1.12547 0.89652 0.91909 1.24930 0.95179 0.95117 0.99027 1.69898 1.36996 1.23011 1.23341 0.86473 0.78532 0.79683 0.82912 1.19738 1.21172 1.21019 1.62532 1.59024 1.00931 1.02387 1.22513 0.97588 0.91949 0.97250 1.22202 0.99629 0.89141 0.85750 0.91195 1.22171 0.96359 0.91485 0.89268 1.86547 1.67294 1.29986 1.53298 1.87962 1.78206 1.22968 1.40091 1.21541 0.93817 0.82468 0.94806 1.21710 1.01708 0.99604 0.96147 1.22229 0.95273 1.02189 1.02431 1.22696 0.98174 0.98128 0.90994 0.95217 0.97260 0.89286 0.93019 0.88966 0.94612 0.93154 0.92086 0.78092 0.91288 0.92093 0.92283 0.93108 0.90774 0.92156 0.94672 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.27 37.16 0.31 -3.84 16 2 C 0.21 5.24 2.35 -68.87 -0.16 5.08 16 3 H 0.04 1.12 8.13 -51.93 -0.42 0.70 16 4 C -0.50 -13.41 7.91 -34.44 -0.27 -13.68 16 5 H 0.06 1.68 6.76 -52.49 -0.35 1.32 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.49 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.52 -11.22 4.08 -227.71 -0.93 -12.15 16 13 C 0.04 0.71 4.20 -3.71 -0.02 0.69 16 14 C 0.09 1.60 2.69 -26.68 -0.07 1.52 16 15 H 0.07 1.28 6.49 -51.93 -0.34 0.95 16 16 C 0.09 1.24 6.71 37.16 0.25 1.48 16 17 O -0.57 -7.93 13.63 -39.95 -0.54 -8.48 16 18 O -0.37 -6.81 9.89 -39.95 -0.40 -7.21 16 19 C 0.11 1.89 1.11 -90.57 -0.10 1.79 16 20 C -0.13 -1.84 8.85 37.16 0.33 -1.51 16 21 C -0.16 -2.60 8.17 37.16 0.30 -2.29 16 22 C 0.03 0.55 4.00 -3.71 -0.01 0.53 16 23 H 0.03 0.69 6.44 -51.93 -0.33 0.36 16 24 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 27 H 0.09 1.90 6.47 -51.93 -0.34 1.57 16 28 H 0.04 0.73 6.43 -51.93 -0.33 0.40 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.37 3.18 9.12 45.56 0.42 3.59 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.31 6.13 -51.93 -0.32 0.99 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.69 6.55 -51.93 -0.34 0.35 16 39 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -29.90 297.92 -6.85 -36.74 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.53 Total: 3.83 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 0.46 Total: -8.72 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.30 Total: -36.64 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.94 Total: -15.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.90 -6.85 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158655777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.825 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds