Wall clock time and date at job start Mon Mar 30 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50695 * 109.47524 * 239.99670 * 2 1 3 5 5 H 1.08002 * 120.00420 * 239.99876 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99551 * 4 2 1 7 7 N 1.31511 * 119.99443 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47078 * 120.00263 * 8 6 4 11 11 H 1.48506 * 109.47479 * 240.00099 * 8 6 4 12 12 N 1.46903 * 109.47353 * 119.99172 * 2 1 3 13 13 C 1.47021 * 110.99699 * 58.95840 * 12 2 1 14 14 C 1.53091 * 109.25787 * 177.60843 * 13 12 2 15 15 H 1.08997 * 109.54025 * 296.89025 * 14 13 12 16 16 C 1.53002 * 109.50737 * 176.78516 * 14 13 12 17 17 O 1.42894 * 109.47350 * 175.21723 * 16 14 13 18 18 O 1.43019 * 109.26239 * 56.84783 * 14 13 12 19 19 C 1.43018 * 113.73588 * 301.32995 * 18 14 13 20 20 C 1.52997 * 109.50498 * 178.60171 * 19 18 14 21 21 C 1.52998 * 109.50760 * 298.69210 * 19 18 14 22 22 C 1.47017 * 110.99835 * 295.27941 * 12 2 1 23 23 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47060 * 300.00158 * 1 2 3 25 25 H 1.08996 * 109.46835 * 60.00529 * 1 2 3 26 26 H 0.97006 * 119.99378 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.50342 * 57.66831 * 13 12 2 28 28 H 1.09004 * 109.50426 * 297.54519 * 13 12 2 29 29 H 1.09000 * 109.46720 * 295.21863 * 16 14 13 30 30 H 1.09001 * 109.47423 * 55.21454 * 16 14 13 31 31 H 0.96700 * 114.00082 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.47153 * 180.08642 * 20 19 18 33 33 H 1.09001 * 109.46832 * 60.08833 * 20 19 18 34 34 H 1.09004 * 109.47261 * 300.08815 * 20 19 18 35 35 H 1.09001 * 109.46639 * 299.91224 * 21 19 18 36 36 H 1.08999 * 109.47295 * 59.90832 * 21 19 18 37 37 H 1.09001 * 109.47196 * 179.91467 * 21 19 18 38 38 H 1.09000 * 109.47282 * 62.43883 * 22 12 2 39 39 H 1.08993 * 109.54351 * 302.30100 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1457 -2.2878 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1876 -4.8165 12 7 2.0197 -0.6923 1.1995 13 6 1.5280 -2.0771 1.2462 14 6 2.1089 -2.7779 2.4771 15 1 3.1942 -2.8282 2.3898 16 6 1.5381 -4.1941 2.5756 17 8 2.1634 -4.8855 3.6586 18 8 1.7579 -2.0390 3.6502 19 6 2.2216 -0.6861 3.6386 20 6 1.7652 0.0213 4.9162 21 6 3.7497 -0.6704 3.5639 22 6 1.6428 0.0366 2.4193 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 0.7095 1.1615 -3.4845 27 1 1.8409 -2.6049 0.3453 28 1 0.4398 -2.0750 1.3082 29 1 0.4635 -4.1413 2.7502 30 1 1.7291 -4.7284 1.6449 31 1 1.8490 -5.7918 3.7805 32 1 2.1176 1.0528 4.9060 33 1 2.1764 -0.4946 5.7838 34 1 0.6765 0.0098 4.9688 35 1 4.1611 -1.1865 4.4314 36 1 4.0742 -1.1746 2.6537 37 1 4.1024 0.3609 3.5536 38 1 0.5563 0.0731 2.4998 39 1 2.0394 1.0509 2.3753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158655777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:15 Heat of formation + Delta-G solvation = -113.992521 kcal Electronic energy + Delta-G solvation = -19241.464812 eV Core-core repulsion = 16376.270327 eV Total energy + Delta-G solvation = -2865.194485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18562 -37.91184 -37.44041 -34.65471 -34.51786 -31.57373 -29.92703 -28.23306 -27.65237 -26.80638 -25.23773 -22.78928 -21.60908 -20.15552 -18.53636 -18.03610 -17.54423 -17.05481 -16.32547 -16.00661 -15.79290 -15.62748 -14.97073 -14.75921 -14.64272 -13.94974 -13.68581 -13.50124 -13.21433 -13.03842 -12.97110 -12.76768 -12.63087 -12.60443 -12.45538 -12.18147 -12.00591 -11.97789 -11.86290 -11.16836 -10.97199 -10.88622 -10.52437 -10.36121 -8.93575 -8.12699 -6.23818 1.40944 1.43383 1.54545 2.41472 2.70208 3.00453 3.17487 3.50609 3.89557 4.03054 4.05813 4.15499 4.30035 4.33291 4.47397 4.52692 4.61315 4.67684 4.70134 4.80281 4.83952 4.84125 4.94791 5.00905 5.04896 5.09655 5.14387 5.28063 5.43654 5.51346 5.66668 5.74459 6.12404 6.33428 6.39739 6.64312 6.88542 6.93946 7.45538 8.93926 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.007574 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.983846 B = 3696.002894 C = 4310.912546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.009 0.991 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.532 5.532 13 C 0.042 3.958 14 C 0.094 3.906 15 H 0.061 0.939 16 C 0.091 3.909 17 O -0.582 6.582 18 O -0.381 6.381 19 C 0.109 3.891 20 C -0.129 4.129 21 C -0.158 4.158 22 C 0.030 3.970 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.398 0.602 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -6.758 11.447 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.256 5.256 13 C -0.087 4.087 14 C 0.036 3.964 15 H 0.079 0.921 16 C 0.013 3.987 17 O -0.391 6.391 18 O -0.301 6.301 19 C 0.070 3.930 20 C -0.187 4.187 21 C -0.215 4.215 22 C -0.099 4.099 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.248 0.752 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.643 -6.172 11.499 13.154 hybrid contribution -0.995 -0.374 -1.479 1.821 sum 0.648 -6.546 10.021 11.987 Atomic orbital electron populations 1.22191 1.00416 0.99073 0.99944 1.19072 0.89953 0.93046 0.87002 0.97355 1.21371 1.30626 1.12527 0.90700 0.92296 1.25691 0.95336 0.95776 1.01854 1.70021 1.37872 1.24185 1.23996 0.85484 0.78056 0.78681 0.79278 1.19040 1.20683 1.20854 1.62423 1.59154 1.01778 1.02201 1.22452 0.97063 0.91028 0.98116 1.22170 0.99070 0.90682 0.84499 0.92133 1.22064 0.96357 0.89908 0.90399 1.86471 1.67647 1.31961 1.52988 1.87970 1.78409 1.23575 1.40130 1.21731 0.94292 0.81920 0.95038 1.21715 1.01785 1.00436 0.94715 1.22170 0.94633 1.02884 1.01859 1.22778 0.97770 0.98396 0.90938 0.95097 0.95900 0.91805 0.92952 0.90217 0.95392 0.92532 0.90311 0.75238 0.89387 0.90866 0.92327 0.91769 0.93006 0.90934 0.95559 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.27 71.98 0.60 -7.09 16 2 C 0.22 10.96 2.35 44.17 0.10 11.06 16 3 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 4 C -0.51 -27.84 7.91 25.60 0.20 -27.64 16 5 H 0.06 3.17 6.76 -2.91 -0.02 3.15 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.28 16 8 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.53 -22.92 4.08 -874.35 -3.57 -26.48 16 13 C 0.04 1.65 4.20 86.31 0.36 2.02 16 14 C 0.09 3.20 2.69 30.63 0.08 3.28 16 15 H 0.06 2.18 6.49 -2.39 -0.02 2.17 16 16 C 0.09 2.45 6.71 71.98 0.48 2.94 16 17 O -0.58 -14.87 13.63 -144.47 -1.97 -16.83 16 18 O -0.38 -13.35 9.89 -144.47 -1.43 -14.78 16 19 C 0.11 3.50 1.11 -10.76 -0.01 3.49 16 20 C -0.13 -3.22 8.85 71.98 0.64 -2.58 16 21 C -0.16 -4.77 8.17 71.98 0.59 -4.18 16 22 C 0.03 1.11 4.00 86.32 0.35 1.46 16 23 H 0.03 1.45 6.44 -2.39 -0.02 1.44 16 24 H 0.02 1.01 6.57 -2.38 -0.02 0.99 16 25 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 26 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 27 H 0.08 3.30 6.47 -2.39 -0.02 3.29 16 28 H 0.03 1.14 6.43 -2.38 -0.02 1.12 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.40 5.64 9.12 -74.06 -0.68 4.97 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.79 6.13 -2.39 -0.01 1.78 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.02 6.55 -2.39 -0.02 1.01 16 39 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 Total: -1.00 -63.45 297.92 -0.50 -63.95 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.36 Total: 17.42 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.84 Total: -16.14 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -3.32 Total: -78.76 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -3.40 Total: -31.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.45 -0.50 -63.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158655777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.042 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds