Wall clock time and date at job start Mon Mar 30 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00200 * 2 1 4 4 C 1.52999 * 109.46865 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47294 * 65.00094 * 4 3 2 6 6 C 1.42896 * 114.00127 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.63082 * 328.34338 * 6 5 4 8 8 C 1.55141 * 110.70504 * 91.45203 * 6 5 4 9 9 C 1.54912 * 101.68443 * 154.19289 * 8 6 5 10 10 N 1.47892 * 104.77430 * 322.97931 * 9 8 6 11 11 C 1.46903 * 111.01248 * 146.33166 * 10 9 8 12 12 H 1.08993 * 109.47085 * 299.06058 * 11 10 9 13 13 C 1.53003 * 109.46890 * 59.06176 * 11 10 9 14 14 C 1.50704 * 109.46710 * 179.05842 * 11 10 9 15 15 H 1.08000 * 120.00074 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99733 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00089 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00136 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.46710 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47347 * 120.00318 * 18 16 14 21 21 H 1.48502 * 109.47472 * 240.00785 * 18 16 14 22 22 C 1.47441 * 108.58347 * 24.04012 * 10 9 8 23 23 H 1.09007 * 109.47133 * 300.00521 * 1 2 3 24 24 H 1.09001 * 109.47268 * 60.00045 * 1 2 3 25 25 H 1.08996 * 109.47645 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46882 * 59.99656 * 3 2 1 27 27 H 1.09000 * 109.46817 * 299.99889 * 3 2 1 28 28 H 1.08996 * 109.47363 * 304.99467 * 4 3 2 29 29 H 1.09003 * 109.47036 * 184.99722 * 4 3 2 30 30 H 1.08996 * 110.99165 * 272.29874 * 8 6 5 31 31 H 1.08997 * 110.99145 * 36.08136 * 8 6 5 32 32 H 1.08995 * 110.37535 * 81.77783 * 9 8 6 33 33 H 1.09006 * 110.37053 * 204.12259 * 9 8 6 34 34 H 1.08997 * 109.47270 * 305.54936 * 13 11 10 35 35 H 1.09002 * 109.46872 * 65.55516 * 13 11 10 36 36 H 1.09000 * 109.46379 * 185.54547 * 13 11 10 37 37 H 0.97004 * 120.00017 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.88659 * 239.63223 * 22 10 9 39 39 H 1.09007 * 109.88225 * 118.45300 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3822 0.4194 -1.3220 7 1 5.8981 1.2197 -0.7914 8 6 5.8182 -0.9676 -0.7809 9 6 7.1360 -1.2079 -1.5591 10 7 6.8875 -0.6457 -2.9042 11 6 8.1147 -0.0683 -3.4687 12 1 8.4648 0.7398 -2.8266 13 6 9.1923 -1.1506 -3.5601 14 6 7.8279 0.4726 -4.8458 15 1 6.8335 0.3956 -5.2600 16 6 8.8349 1.0668 -5.5765 17 7 10.0457 1.1610 -5.0719 18 14 8.4794 1.7379 -7.2831 19 1 7.0504 1.5099 -7.6168 20 1 8.7679 3.1943 -7.3123 21 1 9.3371 1.0433 -8.2768 22 6 5.8247 0.3709 -2.7996 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9786 2.1764 0.0902 30 1 6.0007 -0.9280 0.2930 31 1 5.0781 -1.7308 -1.0212 32 1 7.9622 -0.6859 -1.0766 33 1 7.3477 -2.2751 -1.6264 34 1 9.3295 -1.6103 -2.5813 35 1 8.8842 -1.9103 -4.2785 36 1 10.1309 -0.7020 -3.8857 37 1 10.7543 1.5787 -5.5862 38 1 4.9809 0.0915 -3.4304 39 1 6.2112 1.3439 -3.1031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186878377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:01 Heat of formation + Delta-G solvation = -85.679008 kcal Electronic energy + Delta-G solvation = -18104.494631 eV Core-core repulsion = 15240.527912 eV Total energy + Delta-G solvation = -2863.966719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.97142 -37.95645 -36.44965 -33.42236 -31.05173 -29.98811 -28.37544 -26.86620 -26.26842 -24.93867 -22.60872 -21.54107 -20.51312 -19.29556 -17.06480 -16.73909 -16.10372 -15.72289 -15.54337 -15.08097 -14.57405 -14.18168 -13.79140 -13.36070 -13.01504 -12.79776 -12.28174 -12.06581 -11.91327 -11.70806 -11.46296 -11.15258 -10.96868 -10.87108 -10.70201 -10.55784 -10.31065 -10.11603 -10.01415 -9.81336 -9.77376 -9.18278 -8.85647 -8.41642 -7.13670 -5.98652 -4.02149 3.32191 3.40016 3.45831 3.64743 3.80076 4.44449 4.89156 4.98160 5.04910 5.15101 5.17670 5.20308 5.27202 5.33283 5.40274 5.42398 5.51225 5.53272 5.67762 5.86355 6.04354 6.23593 6.39292 6.54590 6.58802 6.75026 6.87439 7.01843 7.08485 7.09951 7.51659 7.55009 7.71604 7.88763 8.19892 8.35530 8.60726 9.05293 9.62924 11.08665 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.004970 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.723130 B = 5632.957884 C = 6226.354188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.367 6.367 6 C 0.065 3.935 7 H 0.061 0.939 8 C -0.149 4.149 9 C 0.046 3.954 10 N -0.520 5.520 11 C 0.206 3.794 12 H -0.001 1.001 13 C -0.130 4.130 14 C -0.502 4.502 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.062 3.938 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.008 0.992 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.009 0.344 11.438 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.285 6.285 6 C 0.006 3.994 7 H 0.079 0.921 8 C -0.188 4.188 9 C -0.082 4.082 10 N -0.246 5.246 11 C 0.100 3.900 12 H 0.016 0.984 13 C -0.188 4.188 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.066 4.066 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.993 -0.198 10.891 16.955 hybrid contribution 0.193 1.373 -0.119 1.391 sum -12.800 1.175 10.771 16.770 Atomic orbital electron populations 1.22731 0.81391 1.02733 0.99694 1.87989 1.19306 1.27405 1.95322 1.22574 0.92736 0.85362 1.00609 1.22490 0.92958 0.97370 0.88655 1.87989 1.22144 1.81503 1.36854 1.23570 0.80608 0.96079 0.99093 0.92132 1.23186 0.98679 0.98118 0.98791 1.22879 0.94950 1.00401 0.90002 1.63752 1.10085 1.32115 1.18673 1.19489 0.84577 0.91417 0.94564 0.98384 1.21793 1.01847 0.98274 0.96892 1.21193 0.96337 1.36412 1.00073 0.91843 1.24931 0.95034 0.96079 0.98221 1.69919 1.01236 1.44714 1.37562 0.86470 0.78482 0.78375 0.84284 1.19666 1.21201 1.21042 1.22622 0.95553 0.96493 0.91933 0.94425 0.94040 0.89681 0.92191 0.92348 0.92780 0.92021 0.92026 0.90109 0.94368 0.91085 0.97319 0.94536 0.90021 0.93104 0.90796 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.98 10.67 -40.08 -0.43 -5.40 16 3 C 0.06 0.71 6.32 37.16 0.23 0.94 16 4 C 0.06 0.79 6.19 37.16 0.23 1.02 16 5 O -0.37 -6.11 10.04 -40.08 -0.40 -6.51 16 6 C 0.07 1.13 3.39 -24.91 -0.08 1.04 16 7 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 8 C -0.15 -2.45 6.80 -24.59 -0.17 -2.62 16 9 C 0.05 0.87 5.32 -2.27 -0.01 0.86 16 10 N -0.52 -11.73 5.02 -224.63 -1.13 -12.86 16 11 C 0.21 5.31 1.65 -68.86 -0.11 5.19 16 12 H 0.00 -0.04 8.11 -51.93 -0.42 -0.46 16 13 C -0.13 -3.24 8.87 37.16 0.33 -2.91 16 14 C -0.50 -14.00 7.69 -34.44 -0.26 -14.27 16 15 H 0.06 1.79 7.43 -52.49 -0.39 1.40 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -25.73 11.38 55.43 0.63 -25.10 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.06 1.30 5.84 -2.84 -0.02 1.28 16 23 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.67 8.11 -51.93 -0.42 0.24 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.73 7.61 -51.93 -0.40 0.34 16 33 H 0.07 1.30 8.10 -51.93 -0.42 0.87 16 34 H 0.01 0.18 6.83 -51.93 -0.35 -0.18 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 2.20 6.24 -51.93 -0.32 1.88 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.07 1.58 8.06 -51.93 -0.42 1.16 16 39 H 0.07 1.54 7.05 -51.92 -0.37 1.17 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -30.57 313.35 -7.33 -37.90 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.86 Total: -2.79 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 1.15 Total: -6.54 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.50 Total: -37.96 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.83 Total: -11.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.57 -7.33 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186878377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.780 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds