Wall clock time and date at job start Mon Mar 30 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00200 * 2 1 4 4 C 1.52999 * 109.46865 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47294 * 65.00094 * 4 3 2 6 6 C 1.42896 * 114.00127 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.63082 * 328.34338 * 6 5 4 8 8 C 1.55141 * 110.70504 * 91.45203 * 6 5 4 9 9 C 1.54912 * 101.68443 * 154.19289 * 8 6 5 10 10 N 1.47892 * 104.77430 * 322.97931 * 9 8 6 11 11 C 1.46903 * 111.01248 * 146.33166 * 10 9 8 12 12 H 1.08993 * 109.47085 * 299.06058 * 11 10 9 13 13 C 1.53003 * 109.46890 * 59.06176 * 11 10 9 14 14 C 1.50704 * 109.46710 * 179.05842 * 11 10 9 15 15 H 1.08000 * 120.00074 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99733 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00089 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00136 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.46710 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47347 * 120.00318 * 18 16 14 21 21 H 1.48502 * 109.47472 * 240.00785 * 18 16 14 22 22 C 1.47441 * 108.58347 * 24.04012 * 10 9 8 23 23 H 1.09007 * 109.47133 * 300.00521 * 1 2 3 24 24 H 1.09001 * 109.47268 * 60.00045 * 1 2 3 25 25 H 1.08996 * 109.47645 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46882 * 59.99656 * 3 2 1 27 27 H 1.09000 * 109.46817 * 299.99889 * 3 2 1 28 28 H 1.08996 * 109.47363 * 304.99467 * 4 3 2 29 29 H 1.09003 * 109.47036 * 184.99722 * 4 3 2 30 30 H 1.08996 * 110.99165 * 272.29874 * 8 6 5 31 31 H 1.08997 * 110.99145 * 36.08136 * 8 6 5 32 32 H 1.08995 * 110.37535 * 81.77783 * 9 8 6 33 33 H 1.09006 * 110.37053 * 204.12259 * 9 8 6 34 34 H 1.08997 * 109.47270 * 305.54936 * 13 11 10 35 35 H 1.09002 * 109.46872 * 65.55516 * 13 11 10 36 36 H 1.09000 * 109.46379 * 185.54547 * 13 11 10 37 37 H 0.97004 * 120.00017 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.88659 * 239.63223 * 22 10 9 39 39 H 1.09007 * 109.88225 * 118.45300 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3822 0.4194 -1.3220 7 1 5.8981 1.2197 -0.7914 8 6 5.8182 -0.9676 -0.7809 9 6 7.1360 -1.2079 -1.5591 10 7 6.8875 -0.6457 -2.9042 11 6 8.1147 -0.0683 -3.4687 12 1 8.4648 0.7398 -2.8266 13 6 9.1923 -1.1506 -3.5601 14 6 7.8279 0.4726 -4.8458 15 1 6.8335 0.3956 -5.2600 16 6 8.8349 1.0668 -5.5765 17 7 10.0457 1.1610 -5.0719 18 14 8.4794 1.7379 -7.2831 19 1 7.0504 1.5099 -7.6168 20 1 8.7679 3.1943 -7.3123 21 1 9.3371 1.0433 -8.2768 22 6 5.8247 0.3709 -2.7996 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9786 2.1764 0.0902 30 1 6.0007 -0.9280 0.2930 31 1 5.0781 -1.7308 -1.0212 32 1 7.9622 -0.6859 -1.0766 33 1 7.3477 -2.2751 -1.6264 34 1 9.3295 -1.6103 -2.5813 35 1 8.8842 -1.9103 -4.2785 36 1 10.1309 -0.7020 -3.8857 37 1 10.7543 1.5787 -5.5862 38 1 4.9809 0.0915 -3.4304 39 1 6.2112 1.3439 -3.1031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186878377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:00 Heat of formation + Delta-G solvation = -107.254224 kcal Electronic energy + Delta-G solvation = -18105.430203 eV Core-core repulsion = 15240.527912 eV Total energy + Delta-G solvation = -2864.902291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39342 -38.99693 -37.77847 -35.34823 -32.78104 -31.13413 -30.01845 -28.45201 -27.15796 -26.93217 -23.61629 -23.23360 -21.94806 -21.12723 -18.38924 -18.06045 -17.60038 -17.27007 -16.51258 -16.47695 -15.90345 -15.63104 -15.23399 -14.99490 -14.59589 -14.13050 -13.74139 -13.59675 -13.36783 -13.07041 -12.86702 -12.59752 -12.56094 -12.38402 -12.29881 -12.17484 -12.07642 -11.87259 -11.67252 -11.57836 -10.93770 -10.62222 -10.54624 -10.42883 -8.94829 -8.12519 -6.23477 1.40268 1.42297 1.54683 2.42299 2.62233 2.88758 3.16333 3.38074 3.72690 3.86810 4.02306 4.17003 4.23825 4.34917 4.44021 4.48016 4.56776 4.59747 4.67962 4.73873 4.77858 4.83758 4.87749 4.93729 4.98580 5.03582 5.08523 5.15015 5.20608 5.47085 5.72499 5.76613 6.20902 6.23956 6.35432 6.36930 6.67655 6.90206 7.45656 8.94025 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.004970 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.723130 B = 5632.957884 C = 6226.354188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.062 3.938 4 C 0.053 3.947 5 O -0.387 6.387 6 C 0.076 3.924 7 H 0.073 0.927 8 C -0.135 4.135 9 C 0.042 3.958 10 N -0.534 5.534 11 C 0.212 3.788 12 H -0.031 1.031 13 C -0.118 4.118 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.062 3.938 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.059 0.941 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 0.488 12.515 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.014 4.014 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.017 3.983 7 H 0.091 0.909 8 C -0.173 4.173 9 C -0.085 4.085 10 N -0.260 5.260 11 C 0.105 3.895 12 H -0.014 1.014 13 C -0.176 4.176 14 C -0.558 4.558 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.559 5.559 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.066 4.066 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.106 -0.058 11.984 18.510 hybrid contribution 0.470 1.329 -0.406 1.467 sum -13.637 1.271 11.578 17.934 Atomic orbital electron populations 1.22906 0.79645 1.03639 1.00842 1.87931 1.21380 1.28590 1.95593 1.22686 0.91632 0.85055 1.02006 1.22813 0.94197 0.98193 0.87118 1.87958 1.21250 1.82155 1.39263 1.23306 0.81542 0.97153 0.96253 0.90910 1.23100 0.96777 0.97204 1.00211 1.22977 0.96516 1.00520 0.88509 1.63634 1.08904 1.32267 1.21206 1.19273 0.86072 0.90797 0.93359 1.01352 1.21615 1.00393 0.97659 0.97977 1.21407 0.95951 1.37152 1.01339 0.93008 1.25679 0.94830 0.96227 1.01804 1.70025 1.01893 1.45095 1.38905 0.85491 0.78266 0.77949 0.79842 1.19543 1.20415 1.20403 1.22495 0.94595 0.94744 0.94804 0.92372 0.93743 0.89031 0.88939 0.92688 0.92003 0.90154 0.88788 0.90463 0.94434 0.90201 0.94742 0.95309 0.92265 0.92861 0.92076 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.11 10.67 -144.34 -1.54 -11.65 16 3 C 0.06 1.24 6.32 71.98 0.45 1.70 16 4 C 0.05 1.21 6.19 71.98 0.45 1.66 16 5 O -0.39 -12.42 10.04 -144.34 -1.45 -13.87 16 6 C 0.08 2.55 3.39 31.77 0.11 2.66 16 7 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 8 C -0.13 -4.13 6.80 31.98 0.22 -3.92 16 9 C 0.04 1.55 5.32 86.77 0.46 2.01 16 10 N -0.53 -24.25 5.02 -864.60 -4.34 -28.60 16 11 C 0.21 11.16 1.65 44.17 0.07 11.23 16 12 H -0.03 -1.78 8.11 -2.39 -0.02 -1.80 16 13 C -0.12 -5.95 8.87 71.98 0.64 -5.31 16 14 C -0.52 -29.68 7.69 25.60 0.20 -29.49 16 15 H 0.05 3.01 7.43 -2.91 -0.02 2.98 16 16 C 0.01 0.75 5.30 84.65 0.45 1.20 16 17 N -0.92 -53.51 11.38 21.45 0.24 -53.27 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.06 2.63 5.84 86.64 0.51 3.14 16 23 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.04 1.39 7.61 -2.39 -0.02 1.37 16 33 H 0.08 2.77 8.10 -2.38 -0.02 2.76 16 34 H 0.03 1.50 6.83 -2.39 -0.02 1.48 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.06 3.24 6.24 -2.39 -0.01 3.22 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.06 2.69 8.06 -2.39 -0.02 2.67 16 39 H 0.04 2.07 7.05 -2.38 -0.02 2.05 16 Total: -1.00 -65.97 313.35 0.73 -65.24 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.99 Total: 8.89 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.80 Total: -13.46 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -4.10 Total: -81.86 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -2.99 Total: -25.52 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.97 0.73 -65.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186878377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.011 kcal (2) G-P(sol) polarization free energy of solvation -65.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds